Factsheet for PGSC0003DMT400018688

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g051580.2.1	Tomato	cytosol	94.25	94.55
VIT_00s0665g00050.t01	Wine grape	cytosol	54.47	68.06
VIT_00s1395g00010.t01	Wine grape	cytosol	50.64	67.88
KRH43181	Soybean	cytosol	56.71	56.71
KRH59336	Soybean	cytosol	55.91	55.56
AT5G10250.2	Thale cress	cytosol	52.56	52.89
CDX69851	Canola	cytosol	52.88	52.54
Bra009047.1-P	Field mustard	cytosol	52.72	52.38
CDX96986	Canola	cytosol	50.48	50.48
PGSC0003DMT400083737	Potato	cytosol	45.05	42.79
PGSC0003DMT400006173	Potato	cytosol	44.09	40.83
PGSC0003DMT400008211	Potato	cytosol, mitochondrion	33.07	32.91
PGSC0003DMT400045508	Potato	cytosol	31.15	32.13
PGSC0003DMT400045367	Potato	cytosol, mitochondrion	30.83	31.64
PGSC0003DMT400073584	Potato	cytosol	27.96	31.59
PGSC0003DMT400026008	Potato	cytosol	33.23	31.56
PGSC0003DMT400047866	Potato	cytosol	31.31	31.21
PGSC0003DMT400010359	Potato	cytosol	28.43	30.8
PGSC0003DMT400003100	Potato	cytosol	29.23	30.55
PGSC0003DMT400093531	Potato	cytosol	26.2	30.48
PGSC0003DMT400031245	Potato	cytosol	27.8	30.21
PGSC0003DMT400022573	Potato	cytosol	29.55	30.08
PGSC0003DMT400066161	Potato	cytosol	29.55	29.55
PGSC0003DMT400029528	Potato	cytosol	23.8	29.27
PGSC0003DMT400013928	Potato	cytosol	28.43	29.18
PGSC0003DMT400064174	Potato	cytosol	29.23	29.14
PGSC0003DMT400038537	Potato	cytosol	28.91	28.87
PGSC0003DMT400001154	Potato	cytosol	28.91	28.68
PGSC0003DMT400033866	Potato	cytosol	26.84	27.95

Protein Annotations

EntrezGene:102598201	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR027356	UniProt:M1AAZ8	InterPro:NPH3_dom
PFAM:PF00651	PFAM:PF03000	EnsemblPlantsGene:PGSC0003DMG400007239	PGSC:PGSC0003DMG400007239	EnsemblPlants:PGSC0003DMT400018688	PFscan:PS50097
PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF37	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695
UniParc:UPI0002951830	RefSeq:XP_015167911.1	SEG:seg	:	:	:

Description

Root phototropism protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007239]

Coordinates

chr5:+:46577401..46582898

Molecular Weight (calculated)

72098.7 Da

IEP (calculated)

6.852

GRAVY (calculated)

-0.435

Length

626 amino acids

Sequence
(BLAST)

001: MQKLILDGQE NTSDHHESDE NHQNHDQCIV VPTMLNAIAD GFIKKEKSWF ATSQLPSDLS IRVEDITFYV HKYPLIARCG YLNQIELHEP QNSHLGYDIK
101: LEKFPGGSET FETILKFCYG LPISLNPANV AALRCGSEFL EMTEAMEEGN LISKTEAFFT FVVLSSWNDT IMVIKSCEML SPWAENLQIV RRCCDSIAWK
201: IFRENSTAGE IITNKRTWWF DDVATLRIDF FMRIITAVKV KGIKPEIIGS CIMNYGEKCL PSMYGDTRGM DCKIGTNRRN DSQWSITSGR IKETSIGQNK
301: EQRTIIESLI SILPPQKETV SCKFLLRLLK MSIVYAASPA LISELEKRIG MVLENASTND LLIPTYAVGE QTINSNEEQT IHNIDVVQRI LDYFLMYEQQ
401: KLQQQELKST TLNISKLFDS YLVEIARDPN VSITKFRVLA ESLPRHVRTC HDGLYRAIDT YLKTHPSLSE HDRRRLCKIM DCGKLSLDGC MHAAQNERLP
501: MRIIIQRIMQ VLLSEQVKMR AAVHGKDITE SDDNSDKENS WSSTKNEVKS LREELENVKI QMAELHRDYS ELQQEYEKTN NKHRSPWTLG WRKMKKSALF
601: IRKMIEDETQ EGEHRVKPGR RTQSIS

Best Arabidopsis Sequence Match ( AT5G10250.2 )
(BLAST)

001: MNSVSAAERL KSFGDAGPVC NKSIIFPSRV VTLANSFEKK DRSWYVKSQI PTDLSIQVND ITFKAHKFPL ISKCGYISSI ELKPSTSENG YHLKLENFPG
101: GADTFETILK FCYNLPLDLN PLNVAPLRCA SEYLYMTEEF EAGNLISKTE AFITFVVLAS WRDTLTVLRS CTNLSPWAEN LQIVRRCCDL LAWKACNDNN
201: IPEDVVDRNE RCLYNDIATL DIDHFMRVIT TMKARRAKPQ ITGKIIMKYA DNFLPVINDD LEGIKGYGLG KNELQFSVNR GRMEESNSLG CQEHKETIES
301: LVSVLPPQSG AVSCHFLLRM LKTSIVYSAS PALISDLEKR VGMALEDANV CDLLIPNFKN EEQQERVSSP EVYTIYNVDV VHRIFEFFLM HEQQQVLGKP
401: SISKLLDNYL AEIAKDPYLP ITKFQVLAEM LPENAWKCHD GLYRAIDMFL KTHPSLSDHD RRRLCKTMNC EKLSLDACLH AAQNDRLPLR TIVQINTQVL
501: FSEQVKMRMM MQDKLPEKEE ENSGGREDKR MSRDNEIIKT LKEELENVKK KMSELQSDYN ELQQEYERLS SKQKSSHNWG LRWQKVKKSF QTKREDEETR
601: ERTRRRSSTG QRTSFRRRMS MS

Arabidopsis Description

DOT3Phototropic-responsive NPH3 family protein [Source:TAIR;Acc:AT5G10250]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.