Factsheet for PGSC0003DMT400008211

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
plasma membrane 1
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g021640.2.1	Tomato	nucleus	98.73	98.73
VIT_10s0003g04490.t01	Wine grape	cytosol	84.9	84.49
KRH37734	Soybean	cytosol	83.31	81.49
KRH12771	Soybean	cytosol	82.83	81.03
AT1G30440.1	Thale cress	cytosol, mitochondrion, nucleus	77.58	73.38
CDY09586	Canola	cytosol	74.72	71.65
CDY02293	Canola	cytosol, mitochondrion, nucleus	74.72	71.32
Bra032391.1-P	Field mustard	cytosol, mitochondrion, nucleus	74.88	71.26
GSMUA_Achr6P30010_001	Banana	cytosol	61.69	70.8
CDX90249	Canola	cytosol, mitochondrion, nucleus	70.91	70.68
GSMUA_Achr5P00550_001	Banana	cytosol	70.43	70.43
GSMUA_Achr5P02440_001	Banana	cytosol	64.07	70.33
EER91175	Sorghum	cytosol	70.11	69.89
Zm00001d033240_P002	Maize	cytosol, mitochondrion, nucleus	69.79	69.79
GSMUA_Achr9P26110_001	Banana	cytosol	67.09	69.64
GSMUA_Achr4P31620_001	Banana	cytosol	65.82	69.35
TraesCS5D01G385100.1	Wheat	plastid	68.84	68.08
HORVU5Hr1G093120.2	Barley	cytosol	68.36	67.82
CDY27653	Canola	cytosol	65.82	66.99
CDX99692	Canola	cytosol, mitochondrion, nucleus	66.77	65.12
TraesCS5A01G042600.1	Wheat	cytosol	65.18	64.77
Bra025440.1-P	Field mustard	cytosol	58.98	64.75
TraesCS5D01G051100.1	Wheat	cytosol	64.86	64.56
TraesCS5A01G375500.3	Wheat	peroxisome	65.98	64.44
Os08t0130600-01	Rice	plasma membrane	65.66	64.43
TraesCS5B01G377600.1	Wheat	cytosol	68.68	63.72
Os12t0613250-00	Rice	plasma membrane	65.82	63.69
EES14497	Sorghum	cytosol	65.66	62.77
HORVU7Hr1G073650.1	Barley	cytosol	63.91	62.71
TraesCS7D01G306400.1	Wheat	cytosol	64.07	62.67
TraesCS7B01G209700.1	Wheat	cytosol	63.75	62.36
TraesCS7A01G309700.1	Wheat	cytosol	63.27	61.9
TraesCS5B01G046200.2	Wheat	mitochondrion	63.12	61.84
Zm00001d035208_P002	Maize	cytosol	64.86	61.54
PGSC0003DMT400093531	Potato	cytosol	48.01	56.13
PGSC0003DMT400045367	Potato	cytosol, mitochondrion	53.74	55.41
HORVU5Hr1G010370.2	Barley	plastid	65.34	52.09
PGSC0003DMT400026008	Potato	cytosol	48.17	45.98
PGSC0003DMT400001154	Potato	cytosol	44.36	44.22
PGSC0003DMT400045508	Potato	cytosol	37.68	39.04
PGSC0003DMT400006173	Potato	cytosol	40.38	37.57
PGSC0003DMT400083737	Potato	cytosol	38.95	37.18
PGSC0003DMT400003100	Potato	cytosol	34.98	36.73
PGSC0003DMT400010359	Potato	cytosol	33.7	36.68
PGSC0003DMT400064174	Potato	cytosol	35.61	35.67
PGSC0003DMT400022573	Potato	cytosol	34.18	34.96
PGSC0003DMT400038537	Potato	cytosol	34.82	34.93
PGSC0003DMT400066161	Potato	cytosol	34.66	34.82
PGSC0003DMT400013928	Potato	cytosol	33.07	34.1
PGSC0003DMT400031245	Potato	cytosol	30.84	33.68
PGSC0003DMT400029528	Potato	cytosol	27.03	33.4
PGSC0003DMT400018688	Potato	cytosol	32.91	33.07
PGSC0003DMT400047866	Potato	cytosol	32.75	32.8
PGSC0003DMT400033866	Potato	cytosol	30.84	32.28
PGSC0003DMT400073584	Potato	cytosol	26.07	29.6
CDY12056	Canola	plasma membrane	71.38	27.82
Os12t0613300-02	Rice	nucleus	1.27	2.69

Protein Annotations

EntrezGene:102606354	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020
InterPro:IPR000210	InterPro:IPR027356	UniProt:M0ZU95	InterPro:NPH3_dom	PFAM:PF00651	PFAM:PF03000
EnsemblPlantsGene:PGSC0003DMG400003168	PGSC:PGSC0003DMG400003168	EnsemblPlants:PGSC0003DMT400008211	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370
PANTHER:PTHR32370:SF12	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI00029597D4	RefSeq:XP_006359095.1

Description

Root phototropism protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003168]

Coordinates

chr2:-:12187018..12191221

Molecular Weight (calculated)

69871.0 Da

IEP (calculated)

5.797

GRAVY (calculated)

-0.284

Length

629 amino acids

Sequence
(BLAST)

001: MACMKLGSKT DAFQRKGQAW FCTTGLPSDI VVEVGEMTFH LHKFPLLSRS GVMEKRIAEA SEGEDGCVIE LNDIPGGAKT FELVAKFCYG VKLELTAANA
101: VYLRCAAERL DMTEEYGEGN LISQTEIFLN QVVLRSWKDS LKALQTCDDV LPYAEELRIT KRCIDSLAVK ACTDPNLFGW PVMEHVGPLQ SPGGSILWNG
201: ISTGARPKHS SSDWWYEDAS TLSLPLYKRL ISAMESQGVK QETVAGSLNY YAKKYLPGLN RRQTSSESTN RLAPVGLGSS LSEEDQKLLL EEVDNLLPMQ
301: KGLVPTKFLF GLLKTALILR ASPSCISNLE KRIGMQLDQA TLEDLLMPNF SYSMETLYNV DCVQRTLEHF LAMDQGTGGE SPCSIDDEQL IGSPSLTPIT
401: MVAKLIDGYL AEVAPDVNLK LPKFQTLAAS VPEYARPLDD GLYRAIDIYL KSHPWLGESD REQLCRLMDC QKLSLEACTH AAQNERLPLR IIVQVLFFEQ
501: LQLRTSIAGC FLVSENLDEG SRQLRSGTVG PNEGGWATAV RENQVLKVGM DSMRVRVSEL EKECSNMRQE IEKLGRSKGS STWGNVSKKF GFKMKSQMCS
601: AQEGSVSNQN KINSKAIKDD KAKENYRKH

Best Arabidopsis Sequence Match ( AT1G30440.1 )
(BLAST)

001: MACMKLGSKS DAFQRQGQAW FCTTGLPSDI VVEVGEMSFH LHKFPLLSRS GVMERRIAEA SKEGDDKCLI EISDLPGGDK TFELVAKFCY GVKLELTASN
101: VVYLRCAAEH LEMTEEHGEG NLISQTETFF NQVVLKSWKD SIKALHSCDE VLEYADELNI TKKCIESLAM RASTDPNLFG WPVVEHGGPM QSPGGSVLWN
201: GISTGARPKH TSSDWWYEDA SMLSFPLFKR LITVMESRGI REDIIAGSLT YYTRKHLPGL KRRRGGPESS GRFSTPLGSG NVLSEEEQKN LLEEIQELLR
301: MQKGLVPTKF FVDMLRIAKI LKASPDCIAN LEKRIGMQLD QAALEDLVMP SFSHTMETLY DVDSVQRILD HFLGTDQIMP GGVGSPCSSV DDGNLIGSPQ
401: SITPMTAVAK LIDGYLAEVA PDVNLKLPKF QALAASIPEY ARLLDDGLYR AIDIYLKHHP WLAETERENL CRLLDCQKLS LEACTHAAQN ERLPLRIIVQ
501: VLFFEQLQLR TSVAGCFLVS DNLDGGSRQL RSGGYVGGPN EGGGGGGGWA TAVRENQVLK VGMDSMRMRV CELEKECSNM RQEIEKLGKT TKGGGSASNG
601: VGSKTWENVS KKLGFGFKLK SHQMCSAQEG SVSKSNNENV KIEKLKDVKE RRGKHKKASS ISSER

Arabidopsis Description

BTB/POZ domain-containing protein At1g30440 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9Q9]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.