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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • plasma membrane 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus, plasma membrane
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc09g007820.1.1 Tomato cytosol 95.72 86.26
PGSC0003DMT400045367 Potato cytosol, mitochondrion 77.14 68.03
CDY72506 Canola cytosol 14.31 60.63
GSMUA_Achr9P19480_001 Banana extracellular, plasma membrane 53.9 57.43
GSMUA_AchrUn_... Banana cytosol 44.8 56.71
VIT_08s0040g01800.t01 Wine grape cytosol 65.61 56.57
KRH21111 Soybean cytosol 62.64 55.16
KRH32482 Soybean cytosol 59.85 54.67
KRH19874 Soybean cytosol 59.29 54.16
CDY10395 Canola cytosol 54.65 54.14
AT5G03250.1 Thale cress cytosol 58.55 53.21
CDX70320 Canola cytosol 56.32 52.97
Bra005737.1-P Field mustard cytosol 56.13 51.36
CDX80858 Canola cytosol 56.13 51.36
CDY11245 Canola cytosol 56.13 50.5
GSMUA_Achr2P02890_001 Banana cytosol 51.67 49.29
PGSC0003DMT400008211 Potato cytosol, mitochondrion 56.13 48.01
Zm00001d043271_P001 Maize cytosol 55.39 46.06
HORVU3Hr1G076740.1 Barley cytosol 54.46 45.57
EES03716 Sorghum cytosol 54.28 44.85
Os01t0780600-01 Rice plasma membrane 54.83 44.76
TraesCS3B01G349200.1 Wheat cytosol 53.72 44.67
TraesCS3A01G317300.1 Wheat cytosol 52.97 43.91
TraesCS3D01G314000.1 Wheat cytosol 52.79 43.56
Os04t0636500-01 Rice plasma membrane 49.81 41.61
Zm00001d002146_P001 Maize cytosol 47.4 41.13
EES11510 Sorghum cytosol 47.4 40.09
TraesCS2B01G557300.2 Wheat cytosol 46.47 38.64
TraesCS2D01G529600.1 Wheat cytosol 46.65 38.62
TraesCS2A01G526900.1 Wheat cytosol 45.72 37.73
PGSC0003DMT400026008 Potato cytosol 41.82 34.14
PGSC0003DMT400001154 Potato cytosol 39.41 33.6
PGSC0003DMT400045508 Potato cytosol 36.06 31.96
PGSC0003DMT400029528 Potato cytosol 29.74 31.43
PGSC0003DMT400003100 Potato cytosol 34.94 31.39
PGSC0003DMT400010359 Potato cytosol 33.46 31.14
PGSC0003DMT400006173 Potato cytosol 38.48 30.62
PGSC0003DMT400083737 Potato cytosol 37.17 30.35
PGSC0003DMT400064174 Potato cytosol 33.27 28.5
PGSC0003DMT400031245 Potato cytosol 30.3 28.3
PGSC0003DMT400022573 Potato cytosol 32.34 28.29
PGSC0003DMT400047866 Potato cytosol 32.9 28.18
PGSC0003DMT400038537 Potato cytosol 32.71 28.07
PGSC0003DMT400033866 Potato cytosol 30.48 27.29
PGSC0003DMT400066161 Potato cytosol 30.67 26.36
PGSC0003DMT400018688 Potato cytosol 30.48 26.2
PGSC0003DMT400013928 Potato cytosol 28.62 25.25
PGSC0003DMT400073584 Potato cytosol 24.91 24.19
Protein Annotations
EnsemblPlants:PGSC0003DMT400093531EnsemblPlantsGene:PGSC0003DMG400043102InterPro:IPR027356InterPro:NPH3_domInterPro:SKP1/BTB/POZ_sfncoils:Coil
PANTHER:PTHR32370PANTHER:PTHR32370:SF41PFAM:PF03000PFscan:PS51649PGSC:PGSC0003DMG400043102SEG:seg
SUPFAM:SSF54695UniParc:UPI000294DA69UniProt:M1DS56MapMan:35.1::
Description
Non-phototropic hypocotyl [Source:PGSC_GENE;Acc:PGSC0003DMG400043102]
Coordinates
chr9:-:5660041..5661839
Molecular Weight (calculated)
60679.5 Da
IEP (calculated)
5.117
GRAVY (calculated)
-0.253
Length
538 amino acids
Sequence
(BLAST)
001: MNESRKDDGS LCVLQLSDIP GGAKAFELVA KFCYGVRFEL TPLNVVALRC ASEYLQMTNE YGEENLVSQT ESFLNDVFSN WTDTIKALET CEEVLSYAEE
101: LHIVSRCINS LAMKACSDSK LLNWPVMENG NDSVHDVWNG ISTGTKTQPM TDDWWYEDVS FLSLPLYKRL IQAVEAGGMR AGNISGALVF YAKKYVPLMN
201: RQSSFKDVTH AKSGSTPSEA DQRVLLEEIV ELLPKQKGVT ETRFLLRLLR TAMMLQASPS CQVNLEGRVG LQLDQAILDD LLIPNIGYTV ETLYDIDCFQ
301: RILDHFLLID QASAAVSPCI MEESQLIEGS QSLASITRVA NLVDSYLAEV SPDVNFKFPK FQTLASAIPE YARPVSDGIY RAIDIYLKAH PWLTDIEREQ
401: MCRLMNCQKL SLEASTHAAQ NERLPLRVIV QVLFFEQLRL RTSISGWFFV SENSQNVSGA IGQHADNATR GRGRSVEDMR ERVSDLEKEC NNMKEEFQKM
501: VKSKRRWNIF FRRKSQCNSK SGKPSEDATC QTVPPKVP
Best Arabidopsis Sequence Match ( AT5G03250.1 )
(BLAST)
001: MAFMRLGSKS EAFHREGQTW LCTTGLVSDV TIEVGDMKFH LHKFPLLSRS GLLERLIEES STDDGSGCVL SLDEIPGGGK TFELVTKFCY GVKIELTAFN
101: VVSLRCAAEY LEMTDNYGEG NLVGMTETFL NEVFGNWTDS IKALQTCEEV IDYAEDLHII SRCVDSLAVK ACADPSLFNW PVGGGKNATS GQNTEDESHL
201: WNGISASGKM LQHTGEDWWF DDASFLSLPL FKRLITAIEA RGMKLENIAM AVMYYTRKHV PLMNRQVNMD EQVIETPNPS EEDQKTCLEE IVGLLPSKKG
301: VNPTKFLLRL LQTAMVLHAS QSSRENLERR IGNQLDQAAL VDLLIPNMGY SETLYDVECV LRMIEQFVSS TEQAGIVPSP CIIEEGHLVK DGADLLTPTT
401: LVATLVDGYL AEVAPDVNLK LAKFEAIAAA IPDYARPLDD GVYHAIDVYL KAHPWITDSE REHICRLMNC QKLSLEASTH AAQNERLPLR VIVQVLFFEQ
501: LRLRTSVSGW FFVSENLDNP DNQHGANGGL LKPRGENVRE RVSELEKECM NMKQELHKLV RTKRSWKNFT RKLNFKKKSE CCKPKDQATP AI
Arabidopsis Description
BTB/POZ domain-containing protein At5g03250 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYW0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.