Factsheet for VIT_08s0040g01800.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21111	Soybean	cytosol	68.11	69.56
VIT_13s0019g04420.t01	Wine grape	cytosol	67.95	68.5
KRH19874	Soybean	cytosol	64.1	67.91
PGSC0003DMT400045367	Potato	cytosol, mitochondrion	66.35	67.87
KRH32482	Soybean	cytosol	63.46	67.23
Solyc09g007820.1.1	Tomato	cytosol	63.94	66.83
PGSC0003DMT400093531	Potato	cytosol	56.57	65.61
CDY10395	Canola	cytosol	56.89	65.38
AT5G03250.1	Thale cress	cytosol	61.38	64.7
CDX70320	Canola	cytosol	58.33	63.64
CDX80858	Canola	cytosol	59.62	63.27
Bra005737.1-P	Field mustard	cytosol	59.46	63.1
CDY11245	Canola	cytosol	59.46	62.04
GSMUA_AchrUn_...	Banana	cytosol	41.67	61.18
GSMUA_Achr9P19480_001	Banana	extracellular, plasma membrane	48.56	60.0
CDY72506	Canola	cytosol	12.18	59.84
GSMUA_Achr2P02890_001	Banana	cytosol	52.4	57.98
VIT_10s0003g04490.t01	Wine grape	cytosol	57.69	56.96
Zm00001d043271_P001	Maize	cytosol	55.93	53.94
EES03716	Sorghum	cytosol	55.61	53.3
HORVU3Hr1G076740.1	Barley	cytosol	54.81	53.19
Os01t0780600-01	Rice	plasma membrane	55.93	52.96
TraesCS3B01G349200.1	Wheat	cytosol	54.65	52.7
TraesCS3A01G317300.1	Wheat	cytosol	54.01	51.93
TraesCS3D01G314000.1	Wheat	cytosol	54.01	51.69
Os04t0636500-01	Rice	plasma membrane	52.56	50.93
Zm00001d002146_P001	Maize	cytosol	50.16	50.48
EES11510	Sorghum	cytosol	49.68	48.74
TraesCS2B01G557300.2	Wheat	cytosol	49.36	47.6
TraesCS2D01G529600.1	Wheat	cytosol	48.56	46.62
TraesCS2A01G526900.1	Wheat	cytosol	48.08	46.01
VIT_00s0207g00230.t01	Wine grape	cytosol	41.35	40.63
VIT_06s0061g01140.t01	Wine grape	cytosol	36.86	39.66
VIT_00s1395g00010.t01	Wine grape	cytosol	26.76	35.76
VIT_04s0008g06630.t01	Wine grape	cytosol	34.46	34.68
VIT_01s0137g00820.t01	Wine grape	cytosol, golgi, nucleus	34.94	34.6
VIT_07s0129g00250.t01	Wine grape	cytosol	34.78	34.5
VIT_03s0038g00270.t01	Wine grape	cytosol	36.86	34.12
VIT_00s0665g00050.t01	Wine grape	cytosol	27.24	33.93
VIT_07s0005g06300.t01	Wine grape	cytosol	33.49	33.93
VIT_07s0129g00380.t01	Wine grape	cytosol	34.29	33.65
VIT_03s0091g00680.t01	Wine grape	cytosol	33.01	33.01
VIT_07s0104g01440.t01	Wine grape	plastid	33.17	32.81
VIT_08s0056g00610.t01	Wine grape	cytosol	31.41	32.56
VIT_06s0004g08230.t01	Wine grape	mitochondrion	29.65	32.34
VIT_00s0194g00080.t01	Wine grape	cytosol	29.17	30.69

Protein Annotations

EntrezGene:100265479	wikigene:100265479	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ProteinID:CCB57077
ProteinID:CCB57077.1	ncoils:Coil	UniProt:F6HR28	EMBL:FN596008	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000210	InterPro:IPR027356	EntrezGene:LOC100265479	wikigene:LOC100265479	InterPro:NPH3_dom
PFAM:PF00651	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF41
InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniParc:UPI00015CAB9E	ArrayExpress:VIT_08s0040g01800	EnsemblPlantsGene:VIT_08s0040g01800	EnsemblPlants:VIT_08s0040g01800.t01
RefSeq:XP_002276233	RefSeq:XP_002276233.1	:	:	:	:

Description

No Description!

Coordinates

chr8:-:12916459..12920258

Molecular Weight (calculated)

69950.2 Da

IEP (calculated)

5.848

GRAVY (calculated)

-0.200

Length

624 amino acids

Sequence
(BLAST)

001: MACMKLGSKP EAFHREGHTW FCTTGLPSDV AVEIGEMSFN LHKFPLLSRS GLLEKLIENC SNEDGSHCVL QLHELPGGAK AFELVTKFCY GVKIELTSLN
101: IVSLRCAAEY LQMNENYGEG NLIAQTEGFL NEVFSNWVDS IKALGTCEVL PYAEDLHIVS RCIDSLAMKA CADPTLFGWP VSGCTNVQSP AGVVLWNGIS
201: TVNKPQSVRE DWWYGDVSFL SLPFYKRMMQ AVELRGMKPE RVAGSLIFYA KRYLPLMNRQ SSFKDTNHVN PGTTIPTPSE ADQRALLEDI VDLLPNQKGV
301: TSTKFLLRLL RTAMILHTSS LCRENLERRV GAQLDQAVLE DLLIPNMGYS VETLYDIDCV QRILDHFMSV ENTAVATASP CIVEEGKLMD GPDFLTPVML
401: VANLVDGYLA EVAPDVNLKL PKFQSLAAAV PDYARPVNDS IYHAIDLYLK AHPWLIDSER EQICRLMNCQ KLSLEASTHA AQNERLPLRV IVQVLFFEQL
501: RLRTTVSGWF FVSDNLANSQ DPNDNLGIPK TDGSHQVDPE QDHGAGVDDM RERVLELEKE CLSMKQEIQK LVKMKRSWNI IPKMLVFRQK SQRCNSKKSR
601: PCDVKTPLSS SNGHQNHEHG ELGN

Best Arabidopsis Sequence Match ( AT5G03250.1 )
(BLAST)

001: MAFMRLGSKS EAFHREGQTW LCTTGLVSDV TIEVGDMKFH LHKFPLLSRS GLLERLIEES STDDGSGCVL SLDEIPGGGK TFELVTKFCY GVKIELTAFN
101: VVSLRCAAEY LEMTDNYGEG NLVGMTETFL NEVFGNWTDS IKALQTCEEV IDYAEDLHII SRCVDSLAVK ACADPSLFNW PVGGGKNATS GQNTEDESHL
201: WNGISASGKM LQHTGEDWWF DDASFLSLPL FKRLITAIEA RGMKLENIAM AVMYYTRKHV PLMNRQVNMD EQVIETPNPS EEDQKTCLEE IVGLLPSKKG
301: VNPTKFLLRL LQTAMVLHAS QSSRENLERR IGNQLDQAAL VDLLIPNMGY SETLYDVECV LRMIEQFVSS TEQAGIVPSP CIIEEGHLVK DGADLLTPTT
401: LVATLVDGYL AEVAPDVNLK LAKFEAIAAA IPDYARPLDD GVYHAIDVYL KAHPWITDSE REHICRLMNC QKLSLEASTH AAQNERLPLR VIVQVLFFEQ
501: LRLRTSVSGW FFVSENLDNP DNQHGANGGL LKPRGENVRE RVSELEKECM NMKQELHKLV RTKRSWKNFT RKLNFKKKSE CCKPKDQATP AI

Arabidopsis Description

BTB/POZ domain-containing protein At5g03250 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.