Factsheet for GSMUA_Achr6P27970_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66064	Soybean	extracellular	67.5	56.93
PGSC0003DMT400003100	Potato	cytosol	65.96	56.93
Solyc09g061250.2.1	Tomato	cytosol	66.54	56.67
PGSC0003DMT400045508	Potato	cytosol	66.54	56.67
AT5G48800.1	Thale cress	cytosol	67.12	56.51
VIT_07s0005g06300.t01	Wine grape	cytosol	67.12	56.33
CDX85365	Canola	cytosol	66.73	55.65
Bra037460.1-P	Field mustard	cytosol	66.54	55.48
CDX86278	Canola	cytosol	66.54	55.48
KRG99570	Soybean	cytosol, endoplasmic reticulum, nucleus	66.73	51.19
GSMUA_Achr7P21950_001	Banana	plastid	50.1	46.0
GSMUA_Achr8P30170_001	Banana	plastid	43.71	40.5
GSMUA_Achr1P11260_001	Banana	plastid	43.13	38.92
GSMUA_Achr7P26300_001	Banana	cytosol	41.78	36.49
GSMUA_Achr6P30010_001	Banana	cytosol	36.36	34.31
GSMUA_Achr5P02440_001	Banana	cytosol	37.72	34.03
GSMUA_Achr3P20380_001	Banana	cytosol	37.14	33.39
GSMUA_AchrUn_...	Banana	cytosol	27.27	33.18
GSMUA_Achr9P26110_001	Banana	cytosol	38.49	32.84
GSMUA_Achr9P26440_001	Banana	cytosol	36.56	32.47
GSMUA_Achr11P...	Banana	cytosol, plastid	36.36	32.47
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	37.52	32.33
GSMUA_Achr5P00550_001	Banana	cytosol	39.07	32.11
GSMUA_Achr8P04840_001	Banana	cytosol	36.36	31.97
GSMUA_Achr2P02890_001	Banana	cytosol	34.82	31.91
GSMUA_Achr9P19480_001	Banana	extracellular, plasma membrane	30.95	31.68
GSMUA_Achr4P31620_001	Banana	cytosol	36.17	31.32
GSMUA_Achr4P01950_001	Banana	cytosol	24.56	31.13
GSMUA_Achr4P10900_001	Banana	cytosol	32.3	29.98
GSMUA_Achr10P...	Banana	cytosol	31.72	29.13
GSMUA_Achr10P...	Banana	cytosol	31.14	29.11
GSMUA_Achr10P...	Banana	cytosol	31.33	28.47
GSMUA_Achr1P21440_001	Banana	cytosol	33.46	28.45
GSMUA_Achr5P01710_001	Banana	cytosol	31.72	28.23
GSMUA_Achr8P16390_001	Banana	cytosol	27.27	27.01
GSMUA_Achr3P04740_001	Banana	cytosol	30.75	26.95
GSMUA_Achr7P26250_001	Banana	cytosol	32.5	26.92
GSMUA_Achr3P12020_001	Banana	cytosol	27.85	26.37
GSMUA_Achr3P14590_001	Banana	cytosol	28.43	25.65
GSMUA_Achr2P13430_001	Banana	cytosol	33.27	25.63
GSMUA_Achr3P25690_001	Banana	nucleus	32.88	14.24

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	EnsemblPlantsGene:GSMUA_Achr6G27970_001
EnsemblPlants:GSMUA_Achr6P27970_001	EnsemblPlants:GSMUA_Achr6T27970_001	InterPro:IPR000210	InterPro:IPR027356	UniProt:M0TAU2	InterPro:NPH3_dom
PFAM:PF00651	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF21
InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI000296E7D8	SEG:seg	:

Description

BTB/POZ domain-containing protein At5g48800 [Source:GMGC_GENE;Acc:GSMUA_Achr6G27970_001]

Coordinates

chr6:+:28450574..28452682

Molecular Weight (calculated)

57773.5 Da

IEP (calculated)

7.111

GRAVY (calculated)

-0.241

Length

517 amino acids

Sequence
(BLAST)

001: MHCVTHHHHH HHRSLSRQLI FLDVPSDITI DVNGVRFALH KFPLVTRSGR IRKLISEHRD AADTAKIDLL NLPGGPETFQ LAAKFCYGIN FEITTANVAQ
101: LCCASDYLEM TEEYAEGNLS SRSEAYLDDI VSRCTDAIAS KACAEQIASS FSRLEYSSGR LHMNKQVKCG EDWWIEDLSV LRIDLYQRVI EAMKCRGVRP
201: ESIGASLVDC AEKLLKRKPI LGARAGASAE AIEREEKTVI ETIAGLLPGE KHTVPMSFLF GLLRSAVILD CPMTCRLNLE RRIGSQLEMA TLDDLLIPSS
301: QHAGETMFDV DAVHRILVVF SQQDDSDNDG LGYEADGPRP LSQTALDKVG RLVDNYLAEI APDANLKLAK FVVIADALPG YARTTDDGLY RAIDIYLKAH
401: QGLPDLERKR LCKLIDFHKL SEEASGHAAQ NERLPLQAIV QSRCTSNGVF SSGLSPRDNY ASLRRENREL KLELARMRLR LSDLEKGHAC IKQDMETSNS
501: RKLILSVSKR IRKLKLI

Best Arabidopsis Sequence Match ( AT5G48800.1 )
(BLAST)

001: MDKHHHQHLL LQHHQHLHHH QKLSLAKSSR QSCSEWIFRD VPSDITIEVN GGNFALHKFP LVSRSGRIRR IVAEHRDSDI SKVELLNLPG GAETFELAAK
101: FCYGINFEIT SSNVAQLFCV SDYLEMTEEY SKDNLASRTE EYLESIVCKN LEMCVQVLKQ SEILLPLADE LNIIGRCIDA IASKACAEQI ASSFSRLEYS
201: SSGRLHMSRQ VKSSGDGGDW WIEDLSVLRI DLYQRVMNAM KCRGVRPESI GASLVSYAER ELTKRSEHEQ TIVETIVTLL PVENLVVPIS FLFGLLRRAV
301: ILDTSVSCRL DLERRLGSQL DMATLDDLLI PSFRHAGDTL FDIDTVHRIL VNFSQQGGDD SEDEESVFEC DSPHSPSQTA MFKVAKLVDS YLAEIAPDAN
401: LDLSKFLLIA EALPPHARTL HDGLYRAIDL YLKAHQGLSD SDKKKLSKLI DFQKLSQEAG AHAAQNERLP LQSIVQVLYF EQLKLRSSLC SSYSDEEPKP
501: KQQQQQSWRI NSGALSATMS PKDNYASLRR ENRELKLELA RLRMRLNDLE KEHICMKRDM QRSHSRKFMS SFSKKMGKLS FFGHSSSRGS SSPSKQSFRT
601: DSKVLMERTC ASTD

Arabidopsis Description

BTB/POZ domain-containing protein At5g48800 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKB6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.