Factsheet for GSMUA_Achr10P16800_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 2
plasma membrane 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P16390_001	Banana	cytosol	65.19	70.31
CDY72257	Canola	cytosol	53.46	59.49
CDY72267	Canola	cytosol	53.29	59.29
VIT_01s0137g00820.t01	Wine grape	cytosol, golgi, nucleus	65.72	58.73
PGSC0003DMT400047866	Potato	cytosol	63.94	57.32
Solyc05g013570.2.1	Tomato	nucleus	60.92	56.23
KRH74516	Soybean	cytosol	60.75	55.61
AT1G67900.2	Thale cress	nucleus	60.75	54.2
KRH69640	Soybean	cytosol	61.1	54.09
KRG99441	Soybean	cytosol	60.39	53.8
KRH45579	Soybean	nucleus	59.86	53.15
Bra004064.1-P	Field mustard	cytosol	58.79	52.62
HORVU6Hr1G053490.2	Barley	cytosol	56.31	50.56
TraesCS6D01G192300.1	Wheat	cytosol	56.31	50.56
TraesCS6A01G208800.2	Wheat	cytosol	56.31	50.56
TraesCS6B01G237800.1	Wheat	cytosol	55.95	50.32
Zm00001d017079_P001	Maize	cytosol	54.17	48.88
CDX83620	Canola	cytosol	47.25	48.63
CDY13635	Canola	cytosol	49.2	48.26
Bra025208.1-P	Field mustard	cytosol	49.2	48.26
EES05363	Sorghum	cytosol, nucleus, plastid	55.06	48.21
AT3G26490.3	Thale cress	cytosol	50.09	47.96
Zm00001d050959_P001	Maize	cytosol, mitochondrion, plastid	53.11	47.69
Zm00001d003297_P001	Maize	mitochondrion	51.51	47.08
Os04t0477000-01	Rice	cytosol, mitochondrion, plastid	50.62	45.45
EES10995	Sorghum	mitochondrion	51.15	44.04
GSMUA_Achr4P01950_001	Banana	cytosol	31.08	42.89
GSMUA_Achr4P10900_001	Banana	cytosol	38.54	38.96
GSMUA_Achr3P04740_001	Banana	cytosol	40.67	38.81
GSMUA_Achr3P14590_001	Banana	cytosol	39.43	38.74
GSMUA_Achr3P12020_001	Banana	cytosol	37.3	38.46
GSMUA_Achr5P01710_001	Banana	cytosol	39.61	38.38
GSMUA_Achr10P...	Banana	cytosol	36.94	36.56
GSMUA_Achr7P26250_001	Banana	cytosol	40.32	36.38
GSMUA_Achr9P19480_001	Banana	extracellular, plasma membrane	31.26	34.85
GSMUA_Achr3P20380_001	Banana	cytosol	35.35	34.61
GSMUA_Achr2P13430_001	Banana	cytosol	40.85	34.28
GSMUA_Achr5P02440_001	Banana	cytosol	34.81	34.21
GSMUA_Achr2P02890_001	Banana	cytosol	33.93	33.87
GSMUA_AchrUn_...	Banana	cytosol	25.4	33.65
GSMUA_Achr6P30010_001	Banana	cytosol	32.68	33.58
GSMUA_Achr9P26110_001	Banana	cytosol	34.64	32.18
GSMUA_Achr4P31620_001	Banana	cytosol	33.75	31.83
GSMUA_Achr6P27970_001	Banana	cytosol	29.13	31.72
GSMUA_Achr5P00550_001	Banana	cytosol	35.35	31.64
GSMUA_Achr10P...	Banana	cytosol	30.55	31.1
GSMUA_Achr7P21950_001	Banana	plastid	29.84	29.84
GSMUA_Achr9P26440_001	Banana	cytosol	30.55	29.55
GSMUA_Achr8P04840_001	Banana	cytosol	30.73	29.42
GSMUA_Achr7P26300_001	Banana	cytosol	30.73	29.22
GSMUA_Achr1P11260_001	Banana	plastid	29.66	29.14
GSMUA_Achr8P30170_001	Banana	plastid	28.6	28.85
GSMUA_Achr1P21440_001	Banana	cytosol	30.91	28.62
GSMUA_Achr11P...	Banana	cytosol, plastid	25.58	24.87
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	26.29	24.67
GSMUA_Achr3P25690_001	Banana	nucleus	27.53	12.98

Protein Annotations

EnsemblPlants:GSMUA_Achr10P16800_001	EnsemblPlants:GSMUA_Achr10T16800_001	EnsemblPlantsGene:GSMUA_Achr10G16800_001	Gene3D:3.30.710.10	InterPro:IPR027356	InterPro:NPH3_dom
InterPro:SKP1/BTB/POZ_sf	PANTHER:PTHR32370	PANTHER:PTHR32370:SF9	PFAM:PF03000	PFscan:PS51649	SEG:seg
SUPFAM:SSF54695	UniParc:UPI0002954B7B	UniProt:M0RIV5	MapMan:35.1	:	:

Description

Putative Root phototropism protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr10G16800_001]

Coordinates

chr10:-:24200559..24202981

Molecular Weight (calculated)

62658.9 Da

IEP (calculated)

8.581

GRAVY (calculated)

-0.151

Length

563 amino acids

Sequence
(BLAST)

001: MKFMKLGNRP DTFFTTEAIR SVSSEVSTDL QIQVHNSLYQ LHKFPLLSKC LRLQKLCSSL KDTSEHTVIL LPDLPGGAEA FEVCAKFCYG ITITLSSLNI
101: VPVRCAAEYL QMSDDADRGN LVGKLELFFK SCILRRWKDT LVTLQSTRNY SPLCEELGIT GRCIDAIATA IIASPTQAIT SSHSRKAATK NWWAGDISEL
201: GIDHYWRVMV AVKSAGIVPN KLIGEALRIY ARRWLPNMSR NGQQNELEAD DSLSESPTEA PVKHRLLMEK IVSLLPTEKG SVSCSFLLKL LKAANILHAS
301: TSSKMDLARR IGLQLEEASV DGLLIPLDSN SSGTLYDVDI VMAMLEESRS SENVEFEVQE NSRRSSSASH SSKLRVAKLI DGYLQEIARD ENLPMKKLIA
401: IAEAVPDFAR LDHDDLYRVI DIYLRVHPEL DKNARKQLCR ILDCKKLSVE ACMHAAQNEL LPLRVVVQVL FFEHSRAAMS GGQVTELPSN IKALLAKTTA
501: RGEDRDALKL HHIGTATPLE DGWSISRLKS ASSRFKALCS LPKKPKRIIS KLLAMNRSAS ERN

Best Arabidopsis Sequence Match ( AT1G67900.4 )
(BLAST)

001: MKFMKLGSRP DTFYTSEDLR CVSSEVSSDF TIEVSGSRYL LHKFPLLSKC LRLQRMCSES PESIIQLPEF PGGVEAFELC AKFCYGITIT ISAYNIVAAR
101: CAAEYLQMSE EVEKGNLVYK LEVFFNSCIL NGWRDSIVTL QTTKAFPLWS EDLAITSRCI EAIASKVLSH PSKVSLSHSH SRRVRDDDMS SNRAAASSRG
201: WWAEDIAELG IDLYWRTMIA IKSGGKVPAS LIGDALRVYA SKWLPTLQRN RKVVKKKEDS DSDSDTDTSS KHRLLLESII SLLPAEKGAV SCSFLLKLLK
301: AANILNASTS SKMELARRVA LQLEEATVSD LLIPPMSYKS ELLYDVDIVA TILEQFMVQG QTSPPTSPLR GKKGMMDRRR RSRSAENIDL EFQESRRSSS
401: ASHSSKLKVA KLVDGYLQQI ARDVNLPLSK FVTLAESVPE FSRLDHDDLY RAIDIYLKAH KNLNKSERKR VCRVLDCKKL SMEACMHAAQ NEMLPLRVVV
501: QVLFYEQARA AAATNNGEKN TTELPSNIKA LLAAHNIDPS NPNAAAFSTT TSIAAPEDRW SVSGLKSPKS KLSGTLRSKL AEDEEVDERF MNGDGGRTPS
601: RFKAFCAIPG RPKKMFSKLL SINRNSSDKN C

Arabidopsis Description

BTB/POZ domain-containing protein At1g67900 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9V6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.