Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
plastid: 27992503 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0701100-01 | |
| Os03t0809300-01 | |
| Os07t0571900-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G66560.1 | Os03t0701100-01 | AT1G03140.1 | 21798944 |
| AT5G66560.1 | Os07t0571900-01 | AT1G03140.1 | 21798944 |
| AT5G66560.1 | Os03t0809300-01 | AT5G66720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G093880.1 | Barley | cytosol | 52.29 | 82.45 |
| TraesCS5D01G389200.2 | Wheat | cytosol, plastid | 78.2 | 79.29 |
| Zm00001d033941_P001 | Maize | mitochondrion, plastid | 75.91 | 78.92 |
| OQU91026 | Sorghum | cytosol, nucleus, plastid | 71.49 | 78.43 |
| TraesCS5B01G383100.1 | Wheat | plastid | 77.74 | 77.98 |
| HORVU5Hr1G093850.15 | Barley | mitochondrion | 77.9 | 77.9 |
| TraesCS5A01G379300.1 | Wheat | cytosol, plastid | 76.98 | 77.57 |
| TraesCS1B01G298700.1 | Wheat | cytosol, plastid | 47.26 | 74.88 |
| TraesCS2D01G507400.1 | Wheat | nucleus | 62.5 | 74.55 |
| GSMUA_Achr8P04840_001 | Banana | cytosol | 48.17 | 53.74 |
| VIT_00s0207g00230.t01 | Wine grape | cytosol | 50.46 | 52.13 |
| Solyc02g090070.2.1 | Tomato | nucleus | 49.54 | 49.92 |
| CDY45241 | Canola | cytosol | 44.36 | 48.66 |
| PGSC0003DMT400026008 | Potato | cytosol | 48.78 | 48.56 |
| KRH28552 | Soybean | cytosol | 43.45 | 48.14 |
| KRH08351 | Soybean | cytosol | 47.26 | 47.84 |
| Os03t0767600-01 | Rice | cytosol | 49.39 | 47.44 |
| CDY30765 | Canola | cytosol | 44.82 | 46.37 |
| CDX77951 | Canola | cytosol | 38.57 | 46.17 |
| CDX73781 | Canola | cytosol | 38.26 | 46.05 |
| AT3G50840.1 | Thale cress | cytosol | 39.48 | 45.52 |
| KRH76914 | Soybean | cytosol | 35.06 | 45.1 |
| AT5G66560.1 | Thale cress | cytosol | 45.88 | 45.06 |
| KRH69999 | Soybean | endoplasmic reticulum | 46.49 | 44.85 |
| Bra036858.1-P | Field mustard | cytosol | 39.18 | 44.77 |
| Bra012082.1-P | Field mustard | cytosol | 45.27 | 44.39 |
| Os08t0130600-01 | Rice | plasma membrane | 37.65 | 38.53 |
| Os04t0636500-01 | Rice | plasma membrane | 37.04 | 37.73 |
| Os12t0613250-00 | Rice | plasma membrane | 36.89 | 37.23 |
| Os01t0780600-01 | Rice | plasma membrane | 34.15 | 33.99 |
| Os03t0347700-01 | Rice | mitochondrion, plastid | 31.25 | 30.55 |
| Os11t0118500-00 | Rice | plastid | 29.88 | 30.48 |
| Os03t0206700-00 | Rice | plasma membrane | 28.81 | 30.19 |
| Os12t0117600-01 | Rice | plastid | 29.73 | 29.95 |
| Os04t0477000-01 | Rice | cytosol, mitochondrion, plastid | 27.9 | 29.19 |
| Os12t0117400-01 | Rice | plasma membrane | 24.24 | 27.89 |
| Os02t0568200-00 | Rice | cytosol | 32.16 | 27.69 |
| Os12t0583500-01 | Rice | cytosol, plasma membrane | 26.83 | 27.59 |
| Os03t0205700-01 | Rice | cytosol | 25.3 | 27.44 |
| Os03t0609800-02 | Rice | cytosol | 26.37 | 27.29 |
| Os09t0420900-01 | Rice | cytosol | 25.61 | 27.18 |
| Os06t0184500-00 | Rice | cytosol | 25.91 | 26.4 |
| Os11t0118300-01 | Rice | cytosol, mitochondrion, nucleus | 24.54 | 26.09 |
| Os09t0266600-01 | Rice | cytosol | 16.16 | 25.48 |
| GSMUA_Achr3P25690_001 | Banana | nucleus | 43.75 | 24.04 |
| Os02t0594700-01 | Rice | cytosol, mitochondrion | 5.95 | 20.53 |
| Os12t0613300-02 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os03t0738900-00 | EnsemblPlantsGene:Os03g0738900 | InterPro:IPR027356 | InterPro:NPH3_dom | InterPro:SKP1/BTB/POZ_sf | ncoils:Coil |
| PANTHER:PTHR32370 | PANTHER:PTHR32370:SF78 | PFAM:PF03000 | PFscan:PS51649 | ProteinID:BAS86293.1 | SEG:seg |
| SUPFAM:SSF54695 | UniParc:UPI0003938E1C | UniProt:A0A0P0W2T4 | MapMan:35.1 | : | : |
Description
NPH3 domain containing protein. (Os03t0738900-00)
Coordinates
chr3:+:30325808..30327917
Molecular Weight (calculated)
71807.7 Da
IEP (calculated)
6.084
GRAVY (calculated)
-0.377
Length
656 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGRFCTTGL PSDVVFEVQD MSFHLHKFPL MSKSRKIHRM VMEHEAEQPA GQRRRRRRRR RGSEGSNAGE EGDEQTEIEE AEEEEEDEEE EEEGQAFCIA
101: FPDFPGGPGT FETAAKFCYG VRVELTAWNV APLRCAAEYL EMTEEHAEDN LAARAEAFLE QAVLRHPGEA TKALKSCEEL LPHAEELGIV GRCVEAIAAR
201: SSAASRSWFD DLAVLGLHMY KRVMAAMAAR ADVRTEARES CLVSYARGTI PGLSRSMRRR LASAPVSSEV EQRDLLEAVV ASLPADKCSG RVVTAKFLFA
301: LLRTAHILRA SDAACAALER KAATQLEHAT LEDVLIPSYS GATETLYDVD CVERVVRHFL AEEEDHGEAE ASTSAAAAIT EEAPAPAATT LSRPSAVAMV
401: HVGKLVDSYL AEIASDANLK PAKFCELALA LPDHARVYDD GVYRAVDIYL KAHPRLAAEE RDRVCGVVDC RKLTVEACTH AAQNERLPLR AVLQVLFFEQ
501: LQLRRAITGT LLSSAGAGAT QTRLHLHRYQ QPRPAAMAAR HSADAGGGRG EAAWRSTATQ DSQVLRLDMD SMRNRVQDLE RECSSMRRAI KKIDGRSAAA
601: SPRHSDAGDD DAASADGSSR PANWRSRYGC KFSTQVCDSH ARNVVASRAS RMGMSP
101: FPDFPGGPGT FETAAKFCYG VRVELTAWNV APLRCAAEYL EMTEEHAEDN LAARAEAFLE QAVLRHPGEA TKALKSCEEL LPHAEELGIV GRCVEAIAAR
201: SSAASRSWFD DLAVLGLHMY KRVMAAMAAR ADVRTEARES CLVSYARGTI PGLSRSMRRR LASAPVSSEV EQRDLLEAVV ASLPADKCSG RVVTAKFLFA
301: LLRTAHILRA SDAACAALER KAATQLEHAT LEDVLIPSYS GATETLYDVD CVERVVRHFL AEEEDHGEAE ASTSAAAAIT EEAPAPAATT LSRPSAVAMV
401: HVGKLVDSYL AEIASDANLK PAKFCELALA LPDHARVYDD GVYRAVDIYL KAHPRLAAEE RDRVCGVVDC RKLTVEACTH AAQNERLPLR AVLQVLFFEQ
501: LQLRRAITGT LLSSAGAGAT QTRLHLHRYQ QPRPAAMAAR HSADAGGGRG EAAWRSTATQ DSQVLRLDMD SMRNRVQDLE RECSSMRRAI KKIDGRSAAA
601: SPRHSDAGDD DAASADGSSR PANWRSRYGC KFSTQVCDSH ARNVVASRAS RMGMSP
001: MASEKSTSKG QAWFCTTGLP SDIEIEVDDM TFHLHKFPLM SKSRKLHRLI TEQETRSSSS MALITVIDPK VEETDKKGKG HEIEDDKEEE EVEEQEIEEN
101: GYPHIKLEDF PGSSESFEMV AKFCYGVKMD LSASTVVPLR CAAEHLEMTE EYSPDNLISK TERFLSHSVY KSLRESIKAL KACESVSPLA GSLGITEQCI
201: DSIVSRASSA DPSLFGWPVN DGGGRGNISA TDLQLIPGGA AKSRKKPSRD SNMELWFEDL TQLSLPIFKT VILSMRSGDL SSDIIESCLI CYAKKHIPGI
301: LRSNRKPPSS SSTAVSENEQ RELLETITSN LPLDKSSISS TTRFLFGLLR TAIILNAAEI CRDLLERKIG SQLERATLDD LLVPSYSYLN ETLYDVDLVE
401: RILGHFLDTL EQSNTAIVEV DGKSPSLMLV GKLIDGFLAE IASDANLKSD KFYNLAISLP DQARLYDDGL YRAVDVYLKA HPWVSEAERE KICGVMDCQK
501: LTLEACTHAA QNERLPLRAV VQVLFFEQLQ LRHAIAGTLL AAQSPSTSQS TEPRPSAAIR NLTITEEDGD EAEGERQVDA GKWKKTVREN QVLRLDMDTM
601: RTRVHRLERE CSNMKKVIAK IDKEGSSPAT TTDRPRSWSI TKKFGCKFKT QVCDSHEATM VDHRSRRS
101: GYPHIKLEDF PGSSESFEMV AKFCYGVKMD LSASTVVPLR CAAEHLEMTE EYSPDNLISK TERFLSHSVY KSLRESIKAL KACESVSPLA GSLGITEQCI
201: DSIVSRASSA DPSLFGWPVN DGGGRGNISA TDLQLIPGGA AKSRKKPSRD SNMELWFEDL TQLSLPIFKT VILSMRSGDL SSDIIESCLI CYAKKHIPGI
301: LRSNRKPPSS SSTAVSENEQ RELLETITSN LPLDKSSISS TTRFLFGLLR TAIILNAAEI CRDLLERKIG SQLERATLDD LLVPSYSYLN ETLYDVDLVE
401: RILGHFLDTL EQSNTAIVEV DGKSPSLMLV GKLIDGFLAE IASDANLKSD KFYNLAISLP DQARLYDDGL YRAVDVYLKA HPWVSEAERE KICGVMDCQK
501: LTLEACTHAA QNERLPLRAV VQVLFFEQLQ LRHAIAGTLL AAQSPSTSQS TEPRPSAAIR NLTITEEDGD EAEGERQVDA GKWKKTVREN QVLRLDMDTM
601: RTRVHRLERE CSNMKKVIAK IDKEGSSPAT TTDRPRSWSI TKKFGCKFKT QVCDSHEATM VDHRSRRS
Arabidopsis Description
BTB/POZ domain-containing protein At5g66560 [Source:UniProtKB/Swiss-Prot;Acc:Q94A73]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.