CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90674
EER99582
KXG37778

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66560.1	EER99582	AT1G03140.1	21798944
AT5G66560.1	KXG37778	AT1G03140.1	21798944
AT5G66560.1	EER90674	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033941_P001	Maize	mitochondrion, plastid	91.14	86.37
TraesCS5D01G389200.2	Wheat	cytosol, plastid	79.43	73.42
TraesCS5B01G383100.1	Wheat	plastid	79.1	72.32
TraesCS5A01G379300.1	Wheat	cytosol, plastid	78.6	72.2
Os03t0738900-00	Rice	nucleus, plasma membrane, plastid	78.43	71.49
HORVU5Hr1G093880.1	Barley	cytosol	49.67	71.39
HORVU5Hr1G093850.15	Barley	mitochondrion	78.26	71.34
TraesCS2D01G507400.1	Wheat	nucleus	64.38	70.0
TraesCS1B01G298700.1	Wheat	cytosol, plastid	43.81	63.28
VIT_00s0207g00230.t01	Wine grape	cytosol	53.34	50.24
GSMUA_Achr8P04840_001	Banana	cytosol	49.0	49.83
Solyc02g090070.2.1	Tomato	nucleus	52.17	47.93
CDY45241	Canola	cytosol	47.49	47.49
PGSC0003DMT400026008	Potato	cytosol	52.17	47.34
KRH28552	Soybean	cytosol	46.82	47.3
EER93390	Sorghum	cytosol	53.01	46.89
KRH08351	Soybean	cytosol	49.67	45.83
CDY30765	Canola	cytosol	47.49	44.8
KRH76914	Soybean	cytosol	37.96	44.51
CDX77951	Canola	cytosol	40.13	43.8
CDX73781	Canola	cytosol	39.63	43.49
KRH69999	Soybean	endoplasmic reticulum	49.33	43.38
AT5G66560.1	Thale cress	cytosol	48.33	43.26
Bra012082.1-P	Field mustard	cytosol	48.16	43.05
AT3G50840.1	Thale cress	cytosol	40.47	42.53
Bra036858.1-P	Field mustard	cytosol	40.3	41.99
EER91175	Sorghum	cytosol	41.97	39.78
EES14497	Sorghum	cytosol	41.14	37.39
EES03716	Sorghum	cytosol	38.8	35.64
EES11510	Sorghum	cytosol	36.29	34.12
OQU92601	Sorghum	plastid	33.28	30.11
EES16593	Sorghum	plastid	32.27	29.97
KXG25806	Sorghum	cytosol	32.27	29.51
KXG39906	Sorghum	cytosol	30.1	29.27
EES05363	Sorghum	cytosol, nucleus, plastid	30.27	28.15
EER98911	Sorghum	cytosol	28.09	27.14
EES10995	Sorghum	mitochondrion	29.43	26.91
EER89339	Sorghum	cytosol	28.09	26.46
EES07014	Sorghum	nucleus	34.11	26.39
EER91236	Sorghum	cytosol	27.93	26.38
OQU79444	Sorghum	cytosol	28.26	26.24
OQU93039	Sorghum	cytosol	26.25	25.78
OQU82741	Sorghum	plastid	25.75	25.58
KXG35200	Sorghum	cytosol	23.58	24.39
GSMUA_Achr3P25690_001	Banana	nucleus	45.32	22.7
KXG22914	Sorghum	plastid	26.76	22.41

Protein Annotations

EnsemblPlants:OQU91026	EnsemblPlantsGene:SORBI_3001G096900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:BTB/POZ_dom
InterPro:IPR000210	InterPro:IPR027356	InterPro:NPH3_dom	InterPro:SKP1/BTB/POZ_sf	ncoils:Coil	PANTHER:PTHR32370
PANTHER:PTHR32370:SF78	PFAM:PF03000	PFscan:PS51649	ProteinID:OQU91026	ProteinID:OQU91026.1	SEG:seg
SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI000B8B9DC6	UniProt:A0A1Z5S5E0	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr1:-:7448403..7451084

Molecular Weight (calculated)

65204.2 Da

IEP (calculated)

4.987

GRAVY (calculated)

-0.261

Length

598 amino acids

Sequence
(BLAST)

001: MSSSVRHGSS RGQAWFCTTG LPSDVVFEVD DMTFHLHKFP LMSKSRKIHR ILSEQEEQRP RRRRRQMRSS SDGGGDGAAE IEIEEAEEEE EAEPEQEQVR
101: TGEGDGQPYS IAFPDFPGGP GTFEAAAKFC YGVRVELTAW NVAPLRCAAE YLEMTEDHAE DNLAARAEAY LEQTVLRHPG DATKALKSCE ELLPLAEELG
201: IVSRCVDAIA ARSSAASRSW FDDLAVLGLR MYKRMMAAMA ARDDVRAEAR ESCLVSYARG TIPGLSRSMR RRLASAPLSS EVEQKELLEA VVASLPADTC
301: SGRVVTAKFL FALLRTAQIL HASDAARAAL ERKAATQLQQ ATLEDVLILS YSSAAETLYD VDCVQRIVRY FLAEEELGGG EASSSAAIEE EEAVAAEVVA
401: RPSAMVMVQV GKLVDSYLAE VASDANLKPA KFCELALSLP DHARIYDDGV YRAVDIYLKA HPRLTAEERD RVVGVVDCRK LTVEACTHAA QNERLPLRAV
501: LQVLFFEQLQ LRRAITGTLL ASSAGGPPRA STSEAVAWRG ATALAQESQV LRLDMDSVAS RVQELERECS SMRRAIKKID GRGGTRSPGG RSADGGGD

Best Arabidopsis Sequence Match ( AT5G66560.1 )
(BLAST)

001: MASEKSTSKG QAWFCTTGLP SDIEIEVDDM TFHLHKFPLM SKSRKLHRLI TEQETRSSSS MALITVIDPK VEETDKKGKG HEIEDDKEEE EVEEQEIEEN
101: GYPHIKLEDF PGSSESFEMV AKFCYGVKMD LSASTVVPLR CAAEHLEMTE EYSPDNLISK TERFLSHSVY KSLRESIKAL KACESVSPLA GSLGITEQCI
201: DSIVSRASSA DPSLFGWPVN DGGGRGNISA TDLQLIPGGA AKSRKKPSRD SNMELWFEDL TQLSLPIFKT VILSMRSGDL SSDIIESCLI CYAKKHIPGI
301: LRSNRKPPSS SSTAVSENEQ RELLETITSN LPLDKSSISS TTRFLFGLLR TAIILNAAEI CRDLLERKIG SQLERATLDD LLVPSYSYLN ETLYDVDLVE
401: RILGHFLDTL EQSNTAIVEV DGKSPSLMLV GKLIDGFLAE IASDANLKSD KFYNLAISLP DQARLYDDGL YRAVDVYLKA HPWVSEAERE KICGVMDCQK
501: LTLEACTHAA QNERLPLRAV VQVLFFEQLQ LRHAIAGTLL AAQSPSTSQS TEPRPSAAIR NLTITEEDGD EAEGERQVDA GKWKKTVREN QVLRLDMDTM
601: RTRVHRLERE CSNMKKVIAK IDKEGSSPAT TTDRPRSWSI TKKFGCKFKT QVCDSHEATM VDHRSRRS

Arabidopsis Description

BTB/POZ domain-containing protein At5g66560 [Source:UniProtKB/Swiss-Prot;Acc:Q94A73]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.