Factsheet for Solyc07g043130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g084210.1.1
Solyc03g118270.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30520.1	Solyc02g084210.1.1	AT5G66280.1	21798944
AT2G30520.1	Solyc03g118270.1.1	AT5G66280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031245	Potato	cytosol	98.26	98.26
VIT_06s0004g08230.t01	Wine grape	mitochondrion	79.17	79.72
KRG98106	Soybean	cytosol	72.74	73.12
KRH30675	Soybean	cytosol	27.6	71.95
AT2G30520.1	Thale cress	cytosol	71.53	69.48
Bra018309.1-P	Field mustard	cytosol, plastid	71.18	69.37
CDY10743	Canola	cytosol	69.97	69.36
CDY02075	Canola	cytosol	69.62	69.14
KRH17211	Soybean	cytosol	69.44	69.08
KRH72843	Soybean	cytosol	69.44	68.97
CDY23992	Canola	cytosol	66.49	67.79
CDX84827	Canola	cytosol	66.15	67.43
Bra022805.1-P	Field mustard	cytosol	67.19	67.3
KRH30676	Soybean	plastid	32.47	65.61
GSMUA_Achr11P...	Banana	cytosol, plastid	54.69	54.4
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	56.08	53.83
TraesCS4A01G192900.1	Wheat	cytosol	45.83	46.98
TraesCS4B01G122300.1	Wheat	cytosol, plastid	46.35	46.76
TraesCS4D01G120400.1	Wheat	cytosol, plastid	45.83	46.23
Os12t0117400-01	Rice	plasma membrane	44.27	44.74
Zm00001d005051_P001	Maize	cytosol	44.79	44.71
HORVU4Hr1G023260.3	Barley	cytosol, plastid	45.49	41.85
OQU82741	Sorghum	plastid	43.58	41.69
Os11t0118300-01	Rice	cytosol, mitochondrion, nucleus	44.27	41.33
Solyc02g092560.2.1	Tomato	cytosol, nucleus	41.84	40.44
Zm00001d023314_P001	Maize	cytosol	41.49	37.46
Solyc02g064720.2.1	Tomato	cytosol	38.89	37.02
Solyc09g048980.2.1	Tomato	cytosol	33.85	36.93
Solyc09g061250.2.1	Tomato	cytosol	37.85	35.91
KXG22914	Sorghum	plastid	42.36	34.17
Solyc02g090070.2.1	Tomato	nucleus	35.94	31.8
Solyc02g021640.2.1	Tomato	nucleus	33.85	31.0
Solyc09g007820.1.1	Tomato	cytosol	31.25	30.15
Solyc09g074630.2.1	Tomato	cytosol	26.56	29.94
Solyc05g051580.2.1	Tomato	cytosol	30.73	28.37
Solyc10g047530.1.1	Tomato	cytosol	33.16	28.34
Solyc01g105680.2.1	Tomato	nucleus	32.81	28.25
Solyc03g044090.2.1	Tomato	cytosol	30.56	27.94
Solyc08g006870.2.1	Tomato	cytosol	29.51	27.64
Solyc01g107180.2.1	Tomato	cytosol	29.51	27.16
Solyc10g049660.1.1	Tomato	cytosol	28.47	26.84
Solyc01g098820.2.1	Tomato	cytosol, extracellular	25.69	26.71
Solyc02g092480.2.1	Tomato	cytosol	28.82	26.43
Solyc05g013570.2.1	Tomato	nucleus	27.95	26.39
Solyc11g066730.1.1	Tomato	cytosol	27.78	25.36

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	GO:GO:0003674	GO:GO:0004871	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628
GO:GO:0009638	GO:GO:0009987	InterPro:IPR000210	InterPro:IPR027356	UniProt:K4CEH3	InterPro:NPH3_dom
PFAM:PF00651	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF17
InterPro:RPT2	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695	EnsemblPlantsGene:Solyc07g043130.2	EnsemblPlants:Solyc07g043130.2.1
UniParc:UPI000276C3DB	:	:	:	:	:

Description

Root phototropism protein 2 [Source:Projected from Arabidopsis thaliana (AT2G30520) UniProtKB/Swiss-Prot;Acc:Q682S0]

Coordinates

chr7:-:56722801..56725227

Molecular Weight (calculated)

64379.7 Da

IEP (calculated)

7.707

GRAVY (calculated)

-0.129

Length

576 amino acids

Sequence
(BLAST)

001: MATPLKNTNR LSLAMERTGQ WVFSQEIPTD VIVEVGEANF NLHKFMLVAK SNYIRKLILD TKESDVSRIN LSDIPGGPEM FEKAAKFCYG VNFEITVHNV
101: AALRCAAEYL QMTDKYCDNN LASRTEDFLA QVALTSLSGA LVVLKSCENL LPLAHDLNII QRCVDIAGAK ACVEANFPSR SPPNWWTEEL TILDVAFFER
201: IIVAMKTRGA KALTIASAII TYTERSLRDL VRDHSGNNTR LMVPEDSDMR MHQRELLESI VTLLPAERAA FPINFLCCLL RTAIFLRAAS SCKNELEKRI
301: SAILEHVTVD DLLVLSFSYD GERLFDLESV RRIISGFMEK EKSVAVFKGG DFGDVCTTAM QRVAKTVDAY LGEIATFGDL SISKFNGIAI LVPKGARKAD
401: DDLYRAVDIY LKAHPHLDEI EREKVCSVMD PLKLSHEARV HASQNKRLPV QIVLHALYFD QLKIRSGAAD DSNNNMPEAM ATRNQLQADV SLVKENEVLR
501: TELLKMKMYI ADIQKTTNSS QGTSKGSLKK TTFFSSVSKT LGKFNPFKHG SKDTSSIVDD AALDLTKPRR RRFSIS

Best Arabidopsis Sequence Match ( AT2G30520.1 )
(BLAST)

001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS

Arabidopsis Description

RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.