CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81221
CDX84515
CDY18715

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25160.1	CDX81221	AT5G64330.1	16777956
AT4G25160.1	CDX84515	AT5G64330.1	16777956
AT4G25160.1	CDY18715	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34347	Canola	plastid	63.45	97.98
CDY12184	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	39.24	96.22
AT4G25160.1	Thale cress	plastid	56.13	87.19
CDY11059	Canola	plastid	51.89	82.88
CDX92680	Canola	plastid	51.27	82.3
CDY00462	Canola	mitochondrion, plasma membrane	30.45	62.01
CDY16329	Canola	plastid	37.39	61.24
CDY00461	Canola	cytosol	37.24	60.83
CDY00464	Canola	cytosol	36.16	60.44
CDX91574	Canola	plastid	37.09	60.28
CDX99935	Canola	cytosol	34.31	59.97
VIT_16s0013g01920.t01	Wine grape	cytosol	35.39	58.55
CDY16812	Canola	cytosol	35.39	57.59
CDY42871	Canola	cytosol	36.31	57.3
CDY61455	Canola	cytosol	35.62	56.97
CDY02135	Canola	cytosol	37.01	56.87
CDY16813	Canola	cytosol	36.24	56.63
CDY23059	Canola	cytosol	36.85	56.37
CDX87220	Canola	cytosol, peroxisome, plasma membrane	35.7	55.99
Solyc03g093450.2.1	Tomato	nucleus	33.85	54.33
PGSC0003DMT400048527	Potato	cytosol	33.46	53.71
CDX87221	Canola	cytosol	30.45	53.67
KRH56330	Soybean	cytosol, plasma membrane, plastid	32.0	51.94
Solyc05g051610.1.1	Tomato	cytosol	33.23	51.37
KRH62634	Soybean	cytosol	32.07	51.36
PGSC0003DMT400018596	Potato	cytosol	33.15	50.77
CDY70252	Canola	plasma membrane	10.49	49.82
CDY42870	Canola	cytosol	29.76	48.74
CDY68766	Canola	cytosol, plastid	29.45	48.23
CDY02134	Canola	cytosol	28.6	48.12
CDY23058	Canola	cytosol, plastid	29.22	47.85
KXG19255	Sorghum	cytosol	28.14	45.23
Os06t0140800-01	Rice	plasma membrane	28.06	45.16
GSMUA_Achr5P21060_001	Banana	cytosol	27.37	44.21
CDY70022	Canola	cytosol	13.57	44.11
GSMUA_Achr11P...	Banana	cytosol	27.06	43.93
TraesCS4A01G382900.1	Wheat	cytosol	26.99	42.42
Zm00001d045397_P001	Maize	cytosol	24.75	42.4
TraesCS7D01G079400.2	Wheat	cytosol	27.53	42.3
TraesCS4A01G382700.4	Wheat	cytosol	26.29	40.84
TraesCS7A01G084400.4	Wheat	cytosol	26.21	40.57
HORVU7Hr1G018750.2	Barley	cytosol	24.6	38.76
CDY67812	Canola	cytosol	16.89	36.44
HORVU7Hr1G018700.1	Barley	cytosol, plastid	19.89	35.2
CDY54384	Canola	cytosol	20.43	34.64
CDY38258	Canola	cytosol	20.43	34.64
CDY11888	Canola	cytosol, plastid	20.89	34.39
CDY55241	Canola	cytosol	19.58	34.32
CDX88604	Canola	plastid	20.74	34.14
CDY24991	Canola	cytosol	18.35	33.81
CDX93094	Canola	cytosol, nucleus, plastid	17.66	33.78
CDX69713	Canola	cytosol	18.12	33.67
CDY05538	Canola	cytosol	18.27	33.66
CDX97160	Canola	cytosol	18.12	33.57
CDX72299	Canola	cytosol	19.51	32.9
CDY46145	Canola	cytosol	19.58	32.77
CDY13420	Canola	cytosol	19.43	32.77
CDY12864	Canola	cytosol	20.59	32.72
CDY34775	Canola	cytosol	20.05	32.62
CDY50937	Canola	cytosol	17.19	32.55
CDX82677	Canola	cytosol	20.66	32.41
CDY39152	Canola	cytosol	20.66	32.37
CDY64004	Canola	cytosol	18.04	32.32
CDY33692	Canola	cytosol	17.96	32.18
CDY20308	Canola	cytosol	19.82	32.12
CDY60522	Canola	cytosol	18.12	31.89
CDX96762	Canola	cytosol	17.35	31.87
CDY01401	Canola	plastid	20.66	31.83
CDY59782	Canola	cytosol	17.96	31.57
CDX96431	Canola	nucleus	16.73	31.18
CDX81778	Canola	cytosol	17.5	30.97
CDY50990	Canola	cytosol	17.89	30.89
CDX83902	Canola	cytosol	17.12	30.75
CDY35116	Canola	nucleus	18.04	30.71
CDY40035	Canola	nucleus	17.96	30.58
CDY48312	Canola	cytosol, nucleus, plastid	17.12	30.33
CDX72942	Canola	cytosol	16.58	30.32
CDY25396	Canola	nucleus	18.04	29.32
CDY29801	Canola	nucleus	17.81	29.31
CDY53871	Canola	cytosol, nucleus, plastid	15.65	29.21
CDY49864	Canola	cytosol, nucleus, plastid	15.57	29.11
CDX96806	Canola	cytosol	17.12	28.91
CDY26235	Canola	cytosol, nucleus, plastid	17.04	28.78
CDY27350	Canola	plastid	17.58	28.68
CDY37074	Canola	plastid	17.5	27.68
CDX74774	Canola	nucleus, plastid	16.89	27.34
CDY18889	Canola	nucleus, plastid	16.73	26.99
CDX91180	Canola	cytosol	18.35	26.3
CDX82676	Canola	cytosol	16.58	24.52
CDY08105	Canola	cytosol	15.03	24.28
CDY05898	Canola	cytosol	14.8	24.06
CDX86996	Canola	nucleus	14.42	23.64
CDY37899	Canola	cytosol	14.34	23.08
CDX88492	Canola	nucleus	18.12	17.36
CDX87421	Canola	cytosol	18.12	17.34
CDX83940	Canola	cytosol	17.12	15.18

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.39.2	Gene3D:3.30.200.20	Gene3D:3.30.40.10	Gene3D:3.40.50.620	GO:A0A078EN08
EnsemblPlants:CDY03375	ProteinID:CDY03375	ProteinID:CDY03375.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004842	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00116009001	InterPro:IPR000719	InterPro:IPR003613
InterPro:IPR013083	InterPro:IPR014729	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PFAM:PF00582	PFAM:PF04564
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS51698	PANTHER:PTHR27003	PANTHER:PTHR27003:SF29
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	InterPro:Rossmann-like_a/b/a_fold	SMART:SM00220	SMART:SM00504	SUPFAM:SSF52402
SUPFAM:SSF56112	SUPFAM:SSF57850	InterPro:Ser/Thr_kinase_AS	UniPathway:UPA00143	UniParc:UPI0004EEDE9F	InterPro:Ubox_domain
InterPro:UspA	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaC01g17070D

Coordinates

chrLK031943:+:58771..64671

Molecular Weight (calculated)

146469.0 Da

IEP (calculated)

6.094

GRAVY (calculated)

-0.552

Length

1297 amino acids

Sequence
(BLAST)

0001: MSRSPDTLAL PPPPPTFPPP SHTIFVALSE SRKNKNVVTW ALEKFAPEAN VGFKLLHIHP RITSVPTPMG NTIPISEVRD DVVAAYRQEV LWQAEDVLKP
0101: YKKMFERRKV AVEVHVIESD NVAAAIAEVV TRNSIERLVI GGSSRSFFSR RADMCSAISA LVPNFCTVYV VSKGKLSCVR PSDSDGNATI RDDGSERTDS
0201: SSGSSGPNSE STDGVSSALD SQSQSRALSL PVRRFQHVQE IGRQASVPID TSSVGSDDTR CMSMDAEEAK DVSSINRSST DTTSRWTPHL RDYEERKDAM
0301: SSSSSNREYG NAGGKFSWTG MVIDTTHSRT SQQASNMSDN LTEHSYTDNQ LAELNQRRLE EAIKLEELKL KEYEARELAE KEKQNFEKAR RDAESMRERA
0401: EREIAQRREA ERKAARDAKE KEKLEDTLGS PRLQYQHFTW EEIVAATSSF SEELKIGMGA YGSVYKCNMH HTTAAVKVLH TAESGLSKQF QQELEILSKI
0501: RHPHLVLLLG ACPEQGALVY EYMENGSLED RLFQVNNSPP LPWFERVRIA WEVAAALIFL HKSKPKPIIH CDLKPANILL DHNFVSKVED VGLSTMVQVD
0601: PLSTKFTIYK QTSPVGTLSY MDPEYQRTGM ISSKSDVYSF GMIVLQLLTA KPPMALTHLV ESAMDSNDEF LKILDQKAGN WPVEETRELT SLALCCTELR
0701: GKDRPDLRDQ ILPALERCMS MDAEEAKDVS SINRSSTDTT SRWTPHLRDY EERKDAMSSS SSNREYGNAG GKFSWTGMVI DTTHSRTSQQ ASNMSDNLTE
0801: HSYTDNQVNL SFEVEKLRAE LRHVQEMYTA AQTETFDASR KLAELNQRRL EEAIKLEELK LKEYEARELA EKEKQNFEKA RRDAESMRER AEREIAQRRE
0901: AERKAARDAK EKEKLEDTLG SPRLQYQHFT WEEIVAATSS FSEELKIGMG AYGSVYKCNM HHTTAAVKVL HTAESGLSKQ FQQELEILSK IRHPHLVLLL
1001: GACPEQGALV YEYMENGSLE DRLFQVNNSP PLPWFERVRI AWEVAAALVF LHKSKPKPII HRDLKPANIL LDHNFVSKVG DVGLSTMVQV DPLSTKFTIY
1101: KQTSPVGTLS YMDPEYQRTG MISSKSDVYS FGMIVLQLLT AKPPMALTHL VESAMDSNDE FLKILDQKAG NWPVEETREL TSLALCCTEL RGKDRPDLRD
1201: QILPALESLK KVAEKARNSI SSVPTQPPFH FLCPLLKDVM NEPCVAADGY TYDRRAIEDW FEEHNTSPMT DSPLLSKNLL PNYTLYTAIM EWRSRLK

Best Arabidopsis Sequence Match ( AT4G25160.1 )
(BLAST)

001: MSRSPDKLAL PPPPPPPPSR TVVVALSGSS KSKYVVTWAI EKFATEGNVG FKLLHIHPMI TSVPTPMGNA IPISEVRDDV VTAYRQEILW QSEEMLKPYT
101: KLFVRRKVAV EVLVIESDNV AAAIAEEVTR DSIDRIVIGG SSRSFFSRKA DICSVISALM PNFCTVYVVS KGKLSCVRPS DSDGNATIRE DGSERTNSSS
201: GSSGPTSDSS DVMSSAHDSQ SRPLSLPVRR MQHFPAIAGQ ASVPMETSSV GSDETRCMSL DAEEARDVSS INRSSTDTTS RWTPRRRDYE ERKEAMSSSS
301: SNREYGNFGT RFSWSGMGVD TTHSRASQQA SNMSDALSEQ SYTDNQVNLN FEVEKLRAEL RHVQEMYAVA QTETFDASRK LGELNQRRLE EAIKLEELKL
401: KEYEARELAE KEKQNFEKAR RDAESMRERA EREIAQRREA ERKSARDTKE KEKLEGTLGS PQLQYQHFAW EEIMAATSSF SEELKIGMGA YGAVYKCNLH
501: HTTAVVKVLQ SAENQLSKQF QQELEILSKI RHPHLVLLLG ACPEQGALVY EYMENGSLED RLFQVNNSPP LPWFERFRIA WEVAAALVFL HKSKPKPIIH
601: RDLKPANILL DHNFVSKVGD VGLSTMVQVD PLSTKFTIYK QTSPVGTLCY IDPEYQRTGR ISSKSDIYSF GMILLQLLTA KPAIALTHFV ESAMDSNDEF
701: LKILDQKAGN WPIEETRELA ALALCCTELR GKDRPDLKDQ ILPALENLKK VAEKARNSFS GVSTQPPTHF ICPLLKDVMN EPCVAADGYT YDRHAIEEWL
801: KEHNTSPMTD SPLHSKNLLP NYTLYTAIME WRSTR

Arabidopsis Description

PUB35U-box domain-containing protein 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW11]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.