Factsheet for PGSC0003DMT400018596

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006173
PGSC0003DMT400083737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25160.1	PGSC0003DMT400006173	AT5G64330.1	16777956
AT4G25160.1	PGSC0003DMT400083737	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g051610.1.1	Tomato	cytosol	96.1	97.02
VIT_16s0013g01920.t01	Wine grape	cytosol	58.09	62.76
PGSC0003DMT400048527	Potato	cytosol	58.21	61.01
CDY12184	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	36.95	59.17
KRH56330	Soybean	cytosol, plasma membrane, plastid	53.6	56.82
KRH62634	Soybean	cytosol	53.84	56.3
CDX92680	Canola	plastid	49.7	52.1
Bra019185.1-P	Field mustard	plastid	49.35	51.73
Bra013868.1-P	Field mustard	plastid	51.24	51.67
CDY34347	Canola	plastid	51.24	51.67
CDY11059	Canola	plastid	49.47	51.6
AT4G25160.1	Thale cress	plastid	50.41	51.14
CDY00462	Canola	mitochondrion, plasma membrane	37.19	49.45
Bra022543.1-P	Field mustard	plastid	46.16	49.43
CDY16329	Canola	plastid	46.16	49.37
Os06t0140800-01	Rice	plasma membrane	46.87	49.26
CDY02135	Canola	cytosol	48.88	49.05
AT5G51270.1	Thale cress	cytosol	46.52	48.94
CDY00461	Canola	cytosol	45.81	48.87
CDY16812	Canola	cytosol	45.93	48.81
Bra035920.1-P	Field mustard	cytosol	45.57	48.8
CDY23059	Canola	cytosol	48.76	48.7
Bra029317.1-P	Field mustard	cytosol, nucleus, plastid	49.11	48.66
Bra012944.1-P	Field mustard	cytosol	46.4	48.52
CDX99935	Canola	cytosol	42.38	48.38
Bra015198.1-P	Field mustard	cytosol	43.45	48.36
Bra012943.1-P	Field mustard	cytosol	40.97	48.33
CDY00464	Canola	cytosol	44.27	48.32
AT5G61550.2	Thale cress	cytosol	49.0	48.26
CDX91574	Canola	plastid	45.45	48.25
CDY16813	Canola	cytosol	46.87	47.83
GSMUA_Achr5P21060_001	Banana	cytosol	45.22	47.7
CDX87220	Canola	cytosol, peroxisome, plasma membrane	46.52	47.64
CDY42871	Canola	cytosol	46.16	47.57
PGSC0003DMT400024693	Potato	cytosol	20.07	47.49
CDY42870	Canola	cytosol	44.27	47.35
CDY02134	Canola	cytosol	42.98	47.21
Bra029318.1-P	Field mustard	cytosol	43.92	46.97
KXG19255	Sorghum	cytosol	44.63	46.84
CDY68766	Canola	cytosol, plastid	43.68	46.72
GSMUA_Achr11P...	Banana	cytosol	43.92	46.56
CDY23058	Canola	cytosol, plastid	43.45	46.46
AT5G61560.3	Thale cress	cytosol	44.51	46.26
CDY61455	Canola	cytosol	43.33	45.25
CDX87221	Canola	cytosol	39.08	44.97
TraesCS4A01G382900.1	Wheat	cytosol	43.68	44.85
Bra015196.1-P	Field mustard	cytosol	34.83	44.7
TraesCS7D01G079400.2	Wheat	cytosol	43.8	43.96
Zm00001d045397_P001	Maize	cytosol	39.2	43.86
TraesCS4A01G382700.4	Wheat	cytosol	40.85	41.44
TraesCS7A01G084400.4	Wheat	cytosol	40.38	40.81
HORVU7Hr1G018750.2	Barley	cytosol	39.55	40.7
HORVU7Hr1G018700.1	Barley	cytosol, plastid	31.88	36.83
PGSC0003DMT400027823	Potato	cytosol	32.11	36.51
PGSC0003DMT400075335	Potato	nucleus	27.75	34.36
PGSC0003DMT400076836	Potato	cytosol	27.04	33.33
CDY03375	Canola	plastid	50.77	33.15
PGSC0003DMT400033499	Potato	cytosol, nucleus, plastid	30.7	32.99
PGSC0003DMT400035586	Potato	cytosol	30.81	32.87
PGSC0003DMT400012520	Potato	cytosol	26.92	29.73
PGSC0003DMT400000146	Potato	nucleus	29.28	27.8
PGSC0003DMT400040840	Potato	cytosol	24.32	26.18

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102597886	MapMan:18.4.1.39.2	Gene3D:3.30.200.20	Gene3D:3.30.40.10	Gene3D:3.40.50.620
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004842
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR014729	InterPro:Kinase-like_dom_sf	UniProt:M1AAX0	PFAM:PF04564
PFAM:PF07714	EnsemblPlantsGene:PGSC0003DMG400007217	PGSC:PGSC0003DMG400007217	EnsemblPlants:PGSC0003DMT400018596	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PFscan:PS51698	PANTHER:PTHR27003	PANTHER:PTHR27003:SF29	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
InterPro:Rossmann-like_a/b/a_fold	SMART:SM00220	SMART:SM00504	SUPFAM:SSF52402	SUPFAM:SSF56112	SUPFAM:SSF57850
InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002962DC2	InterPro:Ubox_domain	RefSeq:XP_006355617.1	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Kinase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007217]

Coordinates

chr5:-:46660227..46664227

Molecular Weight (calculated)

94828.4 Da

IEP (calculated)

6.837

GRAVY (calculated)

-0.445

Length

847 amino acids

Sequence
(BLAST)

001: MEESDISKIE GQGTIQSPIS SVVAIAITGN KNSRYVVKWA LEKFIPEGET RFMLLHVRPE ITAVPTPMGN LIPIAQVRED VADAFRKEVE LQASEKLLPY
101: KTMCSRRQVQ VGVVQLESND VINAIAGVVS KCSINKLVIG TSTPGLFSRG RNLSASISET SPTFCTVYAV SKGKLSSVRA SSTDNNRFLI DDSSDTSSSS
201: NNSTGHSFSS QAERMDHSST SPASYSHLYS PSHQPQRYQA KSPVHQALQT LLHKRTHFSE NIQSRSSSVD IGEAFQALSI KSNTPLHKRA ILDEVIHPRA
301: LSVAIGEADD EKSCYFSSSG ITDLYNRASS FKKAKVDNQS WSTSQYSTSD VPTDSSSGSQ VNINYDLEKL RIELRHIQGM YAIAQTEAID ASRKLNEFQK
401: LRVDEANKLK QINLKEEEAK ELAEQEKLKC EAAKKEADYA MECVEREAEQ RRAAESIANR EARTKEKLEK SLALPLHHYQ EFTWEEIVTA SSSFSEDLKI
501: GMGSYGMVYK CYLHHTPAAV KVLHSAEAHR TKQFQQELEV LSKIHHPHLL FLLGACPERG CLVYEYMENG SLEDRLTRKN NTPPLTWFDR VRIVWEVASA
601: LVFLHNTKPN PIIHRDLKPA NILLDHNLVS KIGDVGLSTM VQSDSSSAMT AYKDTSPVGT LCYIDPEYQR TGLVSTKSDV YAFGMVILQL LTAKRAIALA
701: HMVEMATEED KLVELLDQEA GEWPLEETKE LAVLALKCTE LRRRDRPDLK DEVLPILERF KEVADRARHS KYNQPPPPSH FKCPLLKEVI QDPCVAADGY
801: TYDRKAIESW LADNDNSPVT NLPLPHKHLL PNYALLSAIK EWKSGKH

Best Arabidopsis Sequence Match ( AT4G25160.1 )
(BLAST)

001: MSRSPDKLAL PPPPPPPPSR TVVVALSGSS KSKYVVTWAI EKFATEGNVG FKLLHIHPMI TSVPTPMGNA IPISEVRDDV VTAYRQEILW QSEEMLKPYT
101: KLFVRRKVAV EVLVIESDNV AAAIAEEVTR DSIDRIVIGG SSRSFFSRKA DICSVISALM PNFCTVYVVS KGKLSCVRPS DSDGNATIRE DGSERTNSSS
201: GSSGPTSDSS DVMSSAHDSQ SRPLSLPVRR MQHFPAIAGQ ASVPMETSSV GSDETRCMSL DAEEARDVSS INRSSTDTTS RWTPRRRDYE ERKEAMSSSS
301: SNREYGNFGT RFSWSGMGVD TTHSRASQQA SNMSDALSEQ SYTDNQVNLN FEVEKLRAEL RHVQEMYAVA QTETFDASRK LGELNQRRLE EAIKLEELKL
401: KEYEARELAE KEKQNFEKAR RDAESMRERA EREIAQRREA ERKSARDTKE KEKLEGTLGS PQLQYQHFAW EEIMAATSSF SEELKIGMGA YGAVYKCNLH
501: HTTAVVKVLQ SAENQLSKQF QQELEILSKI RHPHLVLLLG ACPEQGALVY EYMENGSLED RLFQVNNSPP LPWFERFRIA WEVAAALVFL HKSKPKPIIH
601: RDLKPANILL DHNFVSKVGD VGLSTMVQVD PLSTKFTIYK QTSPVGTLCY IDPEYQRTGR ISSKSDIYSF GMILLQLLTA KPAIALTHFV ESAMDSNDEF
701: LKILDQKAGN WPIEETRELA ALALCCTELR GKDRPDLKDQ ILPALENLKK VAEKARNSFS GVSTQPPTHF ICPLLKDVMN EPCVAADGYT YDRHAIEEWL
801: KEHNTSPMTD SPLHSKNLLP NYTLYTAIME WRSTR

Arabidopsis Description

PUB35U-box domain-containing protein 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW11]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.