Factsheet for PGSC0003DMT400000146

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g094660.2.1	Tomato	cytosol	95.18	94.97
Os09t0570000-01	Rice	cytosol, plastid	23.77	58.89
VIT_15s0046g02480.t01	Wine grape	cytosol	57.62	58.34
Os02t0665500-01	Rice	cytosol	26.79	56.77
KRH00764	Soybean	plastid	55.04	55.61
TraesCS6B01G368900.1	Wheat	cytosol	13.45	55.56
KRH40448	Soybean	cytosol	54.04	54.59
KRH65013	Soybean	plastid	52.02	52.85
KRH48130	Soybean	plastid	52.02	52.61
AT2G45910.1	Thale cress	plastid	49.1	52.52
CDX74774	Canola	nucleus, plastid	46.19	51.44
Bra004947.1-P	Field mustard	nucleus, plastid	45.85	51.06
CDY27350	Canola	plastid	45.4	50.94
CDY18889	Canola	nucleus, plastid	45.85	50.87
Bra039305.1-P	Field mustard	plastid	46.97	50.54
CDY37074	Canola	plastid	46.3	50.37
GSMUA_AchrUn_...	Banana	cytosol	41.14	45.88
GSMUA_Achr7P04450_001	Banana	cytosol	40.13	45.78
GSMUA_Achr5P12380_001	Banana	cytosol	41.03	45.75
TraesCS6A01G338300.1	Wheat	cytosol	29.04	44.58
Os10t0548300-01	Rice	cytosol	32.4	44.33
KXG35135	Sorghum	cytosol	37.89	43.84
TraesCS5A01G294700.1	Wheat	cytosol	37.33	43.13
Zm00001d051397_P001	Maize	nucleus	41.37	42.81
KXG31052	Sorghum	nucleus	43.05	42.52
TraesCS6D01G227900.1	Wheat	cytosol	42.94	42.51
Zm00001d029829_P001	Maize	cytosol	29.37	42.46
GSMUA_Achr1P17400_001	Banana	cytosol	35.2	42.38
TraesCS5D01G302100.1	Wheat	cytosol	36.66	42.3
TraesCS6A01G245500.1	Wheat	cytosol	42.49	42.25
TraesCS5B01G294000.1	Wheat	cytosol	36.32	42.19
PGSC0003DMT400040840	Potato	cytosol	37.11	42.06
TraesCS6B01G278900.1	Wheat	mitochondrion	42.6	41.85
GSMUA_Achr8P11510_001	Banana	cytosol	39.24	41.18
Os10t0548700-01	Rice	cytosol	40.92	40.6
PGSC0003DMT400024693	Potato	cytosol	16.26	40.5
TraesCS1D01G211400.1	Wheat	mitochondrion	34.98	39.85
TraesCS1A01G208100.1	Wheat	mitochondrion	35.09	39.27
KXG38967	Sorghum	cytosol	26.79	39.24
HORVU6Hr1G064130.1	Barley	plastid	42.71	39.2
TraesCS1B01G222200.1	Wheat	cytosol	34.3	38.83
HORVU1Hr1G053270.1	Barley	cytosol	33.74	38.54
Zm00001d002693_P001	Maize	plastid	37.44	38.17
Os09t0569800-00	Rice	plastid	36.66	38.11
EER96373	Sorghum	plastid	36.66	37.5
Os03t0424200-01	Rice	cytosol	21.52	37.07
TraesCS4D01G003800.1	Wheat	cytosol	30.38	36.87
TraesCS5B01G293900.1	Wheat	plastid	35.31	36.25
Zm00001d045230_P001	Maize	cytosol	30.04	35.4
Os06t0163000-03	Rice	cytosol	31.84	35.28
TraesCS7D01G121000.1	Wheat	cytosol	28.25	34.9
TraesCS7A01G122600.1	Wheat	cytosol	28.25	34.85
TraesCS5D01G302000.1	Wheat	plastid	35.54	34.84
TraesCS2B01G409700.1	Wheat	cytosol, nucleus, plasma membrane	23.32	34.67
TraesCS5A01G294600.1	Wheat	plastid	35.09	34.36
TraesCS4B01G350300.1	Wheat	plasma membrane	28.81	34.31
EER89251	Sorghum	cytosol	29.93	33.97
TraesCS7A01G122700.1	Wheat	nucleus	27.58	33.93
TraesCS5B01G202600.1	Wheat	cytosol	22.42	33.73
HORVU0Hr1G012820.1	Barley	cytosol, mitochondrion	22.31	33.67
HORVU5Hr1G077700.15	Barley	cytosol, plasma membrane	29.6	33.59
OQU85984	Sorghum	cytosol	28.59	33.38
Os02t0822900-01	Rice	cytosol	32.06	33.03
TraesCS5D01G212200.1	Wheat	cytosol	29.04	32.5
HORVU5Hr1G060580.1	Barley	cytosol	30.61	32.46
TraesCS5B01G204400.1	Wheat	cytosol	30.49	32.3
TraesCS5A01G205800.1	Wheat	cytosol	30.49	32.23
TraesCS5A01G203900.1	Wheat	cytosol	30.16	32.22
TraesCS6A01G245400.1	Wheat	nucleus	33.63	32.12
TraesCS5D01G210500.1	Wheat	cytosol	30.16	31.95
OQU92380	Sorghum	cytosol	23.77	31.78
HORVU6Hr1G064110.10	Barley	nucleus	32.4	31.76
OQU85675	Sorghum	cytosol	37.11	31.52
TraesCS7A01G532900.1	Wheat	cytosol	20.96	31.43
TraesCS6D01G227800.1	Wheat	nucleus	35.09	31.11
TraesCS7D01G520100.1	Wheat	cytosol	21.19	30.93
PGSC0003DMT400048527	Potato	cytosol	27.91	30.82
Zm00001d051875_P001	Maize	mitochondrion	29.93	30.24
TraesCS4A01G220300.1	Wheat	cytosol	23.54	29.96
TraesCS7B01G450000.2	Wheat	cytosol	21.08	29.47
PGSC0003DMT400018596	Potato	cytosol	27.8	29.28
PGSC0003DMT400027823	Potato	cytosol	24.44	29.26
TraesCS4B01G098900.1	Wheat	cytosol	24.44	29.07
TraesCS4D01G095000.1	Wheat	cytosol	24.44	29.07
TraesCS2A01G391300.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	23.65	28.63
PGSC0003DMT400075335	Potato	nucleus	21.86	28.51
PGSC0003DMT400076836	Potato	cytosol	21.86	28.38
TraesCS2D01G389400.2	Wheat	cytosol, nucleus, plasma membrane	16.93	27.66
PGSC0003DMT400033499	Potato	cytosol, nucleus, plastid	24.22	27.41
PGSC0003DMT400035586	Potato	cytosol	24.22	27.2
TraesCS2D01G389200.1	Wheat	cytosol	15.58	27.2
Zm00001d051399_P002	Maize	cytosol	29.04	27.09
PGSC0003DMT400012520	Potato	cytosol	20.96	24.38
Os02t0665800-01	Rice	nucleus	12.33	19.86
Os09t0570100-01	Rice	cytosol, nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102597027	MapMan:18.4.1.39.2	Gene3D:3.30.200.20	Gene3D:3.30.40.10	Gene3D:3.40.50.620
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004842
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR014729	InterPro:Kinase-like_dom_sf	UniProt:M0ZG64	PFAM:PF00069
PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400000043	PGSC:PGSC0003DMG400000043	EnsemblPlants:PGSC0003DMT400000146	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PFscan:PS51698	PANTHER:PTHR27003	PANTHER:PTHR27003:SF52	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
InterPro:Rossmann-like_a/b/a_fold	SMART:SM00220	SMART:SM00504	SUPFAM:SSF52402	SUPFAM:SSF56112	SUPFAM:SSF57850
InterPro:Ser/Thr_kinase_AS	UniParc:UPI000295FD8A	InterPro:Ubox_domain	RefSeq:XP_006339578.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Protein kinase; U box [Source:PGSC_GENE;Acc:PGSC0003DMG400000043]

Coordinates

chr1:+:72233966..72243677

Molecular Weight (calculated)

100118.0 Da

IEP (calculated)

6.056

GRAVY (calculated)

-0.396

Length

892 amino acids

Sequence
(BLAST)

001: MALETPSSVV RRSPVRYPEV DLSRLNLSEQ IVQEGSPVTP VVVDDVMYVA VGKDLKETEP TLTWALHKSG GRKICILHVH TPAQKIPMMG TKFNIDQLDV
101: HQVRAYHEKE RQVMHKILEK YILICGRAGV RADKIVLEMD SIEKGIVELI SQHGIGKLVM GAAANKCYSK KMSDLRSKKA IYVRLQAPTF CCIWFVCKGN
201: LIYTRESKPE RLNTDSVSPS IPASPVNDIV VRSGSVTEGY SEQVKLRGAF TEYPRVASDN HGIILSGLPS GGTLQANFPL MSSDRSADSW DGIPRISSSV
301: ASRFSSSSSV EMVDDSFSKT ERNETALDPS GLRYFNFGPH QSSAPSIAER VNYELAGSMN DELYDRYEQH VAEAETARRE AFEESIKRRK AEKDAIEARR
401: RAKASETFYA DELRRRREIE EALAKDKEKA DQMKAQLNKL LRDLQAAQAQ NSSLESQLLD SDTQVQELEQ KMFSAVDLLQ KYRKERDELE VERDDALKSA
501: EALREQHSDG SSFTSTSSLF AEFYFHEIEE ATRTFDPALK IGEGGYGCIY RGLLRHTQVA VKMLHPHSLQ GPSEFQQEVN ILSKLRHPNV VTLIGACPEA
601: WTLVYEYLPN GSLEDRLTCK DNTPPLSWQT RIRVAAELCC ALIFLHSCTA RGIIHGDLKP ANVLLDANFV SKLSDFGICR VLSEDDFSEN STTLCYRTDP
701: KGTFAYMDPE FLETGELTRK SDVYSFGIIL LRLLTGRSAL GIKNEIQYAL DKGNLKNLLD PTAGDWPFVQ AKQLAHLAMS CCEKNSRCRP ELSSEVWKVL
801: EPMRASCGAS SFRMDSEEHC DIPSYFICPI FQEIMQDPVV AADGFTYEAE ALRGWLDSGH ETSPMTNLTL SHKNLVPNHA LRSAIQEWLQ QN

Best Arabidopsis Sequence Match ( AT2G45910.1 )
(BLAST)

001: MALVSPIPAM GERAGSMRFH GIGSPGSRSS RSGIMDEPVS RLIDEKIFVA VDKHVAKSKS TLIWALQNTG GKKICLIHVH QPSQMIPLMG AKFPVGAVKE
101: EEVRVFREKE REKVHMILDD YLRICQQRGV RAEKMFIEME SIENGIVQLI SELGIRKLVM GAAADRHYSR RMTDLKSRKA IFVRREAPTL CQIWFTCKGY
201: LIHTREATMD DTESEYASPR PSISASDLLQ TFSTPESEHQ HISRVQSTDS VQQLVSNGSS TEQSGRVSDG SLNTDEEERE SDGSEVTGSA TVMSSGHSSP
301: SSFPDGVDDS FNVKIRKATS EAHSSKQEAF AETLRRQKAE KNALDAIRRA KQSESAYSEE LKRRKDTEIA VAKEKERFIT IKNEQEVIME ELQSAMAQKA
401: MLESQIAKSD GTMEKLNQKL DIAVKLLQKL RDEREELQTE RDRALREAEE LRSHAETSTL QLPQYFTDFS FSEIEEATNH FDSTLKIGEG GYGSIYVGLL
501: RHTQVAIKML NPNSSQGPVE YQQEVDVLSK MRHPNIITLI GACPEGWSLV YEYLPGGSLE DRLTCKDNSP PLSWQNRVRI ATEICAALVF LHSNKAHSLV
601: HGDLKPANIL LDSNLVSKLS DFGTCSLLHP NGSKSVRTDV TGTVAYLDPE ASSSGELTPK SDVYSFGIIL LRLLTGRPAL RISNEVKYAL DNGTLNDLLD
701: PLAGDWPFVQ AEQLARLALR CCETVSENRP DLGTEVWRVL EPMRASSGGS SSFHLGRNEH RIAPPYFICP IFQEVMQDPH VAADGFTYEA EAIRAWLDSE
801: HDTSPMTNVK LSHTSLIANH ALRSAIQEWL QHHL

Arabidopsis Description

PUB33U-box domain-containing protein 33 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.