Factsheet for PGSC0003DMT400048527

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006173
PGSC0003DMT400083737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25160.1	PGSC0003DMT400006173	AT5G64330.1	16777956
AT4G25160.1	PGSC0003DMT400083737	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g093450.2.1	Tomato	nucleus	95.17	95.17
VIT_16s0013g01920.t01	Wine grape	cytosol	63.37	65.31
KRH62634	Soybean	cytosol	59.16	59.01
CDY12184	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	38.61	58.98
KRH56330	Soybean	cytosol, plasma membrane, plastid	57.67	58.32
PGSC0003DMT400018596	Potato	cytosol	61.01	58.21
AT4G25160.1	Thale cress	plastid	53.96	52.22
CDX92680	Canola	plastid	51.73	51.73
Bra013868.1-P	Field mustard	plastid	53.47	51.43
CDY34347	Canola	plastid	53.47	51.43
Bra019185.1-P	Field mustard	plastid	51.11	51.11
CDY11059	Canola	plastid	50.74	50.49
CDX87220	Canola	cytosol, peroxisome, plasma membrane	50.99	49.82
Bra012943.1-P	Field mustard	cytosol	43.94	49.44
AT5G51270.1	Thale cress	cytosol	48.76	48.94
CDY02135	Canola	cytosol	51.11	48.93
CDY16812	Canola	cytosol	48.27	48.93
Bra035920.1-P	Field mustard	cytosol	47.9	48.93
AT5G61550.2	Thale cress	cytosol	51.98	48.84
CDY16813	Canola	cytosol	50.12	48.8
CDY02134	Canola	cytosol	46.53	48.77
CDY23059	Canola	cytosol	51.11	48.7
Bra029317.1-P	Field mustard	cytosol, nucleus, plastid	51.36	48.54
Bra012944.1-P	Field mustard	cytosol	48.51	48.4
Os06t0140800-01	Rice	plasma membrane	48.14	48.26
CDY42870	Canola	cytosol	47.28	48.23
Bra029318.1-P	Field mustard	cytosol	47.03	47.98
CDY16329	Canola	plastid	46.91	47.85
Bra022543.1-P	Field mustard	plastid	46.78	47.79
AT5G61560.3	Thale cress	cytosol	48.14	47.73
CDY68766	Canola	cytosol, plastid	46.78	47.73
GSMUA_Achr5P21060_001	Banana	cytosol	47.4	47.7
CDY42871	Canola	cytosol	48.51	47.69
CDY23058	Canola	cytosol, plastid	46.53	47.47
CDY00462	Canola	mitochondrion, plasma membrane	37.38	47.41
CDY00464	Canola	cytosol	45.3	47.16
CDX99935	Canola	cytosol	43.19	47.03
CDX91574	Canola	plastid	46.29	46.87
CDY00461	Canola	cytosol	46.04	46.85
KXG19255	Sorghum	cytosol	46.66	46.72
PGSC0003DMT400024693	Potato	cytosol	20.67	46.65
GSMUA_Achr11P...	Banana	cytosol	46.04	46.56
Bra015198.1-P	Field mustard	cytosol	43.81	46.52
CDX87221	Canola	cytosol	41.46	45.52
CDY61455	Canola	cytosol	44.55	44.39
TraesCS4A01G382900.1	Wheat	cytosol	45.3	44.36
Bra015196.1-P	Field mustard	cytosol	35.52	43.48
TraesCS7D01G079400.2	Wheat	cytosol	45.42	43.48
Zm00001d045397_P001	Maize	cytosol	40.35	43.06
TraesCS7A01G084400.4	Wheat	cytosol	42.82	41.29
TraesCS4A01G382700.4	Wheat	cytosol	42.45	41.08
HORVU7Hr1G018750.2	Barley	cytosol	40.97	40.22
HORVU7Hr1G018700.1	Barley	cytosol, plastid	33.54	36.97
PGSC0003DMT400027823	Potato	cytosol	33.91	36.78
PGSC0003DMT400075335	Potato	nucleus	29.46	34.8
PGSC0003DMT400076836	Potato	cytosol	28.84	33.92
CDY03375	Canola	plastid	53.71	33.46
PGSC0003DMT400035586	Potato	cytosol	32.18	32.75
PGSC0003DMT400033499	Potato	cytosol, nucleus, plastid	31.68	32.49
PGSC0003DMT400012520	Potato	cytosol	27.6	29.07
PGSC0003DMT400000146	Potato	nucleus	30.82	27.91
PGSC0003DMT400040840	Potato	cytosol	25.37	26.05

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.39.2	Gene3D:3.30.200.20	Gene3D:3.30.40.10	Gene3D:3.40.50.620	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004842	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR003613
InterPro:IPR013083	InterPro:IPR014729	InterPro:Kinase-like_dom_sf	UniProt:M1BMJ5	PFAM:PF04564	PFAM:PF07714
EnsemblPlantsGene:PGSC0003DMG400018850	PGSC:PGSC0003DMG400018850	EnsemblPlants:PGSC0003DMT400048527	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PFscan:PS51698	PANTHER:PTHR27003	PANTHER:PTHR27003:SF29	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	InterPro:Rossmann-like_a/b/a_fold
SMART:SM00220	SMART:SM00504	SUPFAM:SSF52402	SUPFAM:SSF56112	SUPFAM:SSF57850	InterPro:Ser-Thr/Tyr_kinase_cat_dom
InterPro:Ser/Thr_kinase_AS	UniParc:UPI000294D834	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Kinase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018850]

Coordinates

chr3:-:38289107..38296267

Molecular Weight (calculated)

90585.1 Da

IEP (calculated)

6.630

GRAVY (calculated)

-0.362

Length

808 amino acids

Sequence
(BLAST)

001: MEEKDGVVIK VEGLSALPLL NSSTIAVAIN GKKMSKYVVK WALDKFVPEG KVCFKLLHVR PRIVGVPTPM GSFIPIAQVR EDVVAAFRKD VEWQTSEKLL
101: PYKMLCTNRK VQVEVLQLES DDIVNAIAQE ITKLNIIKLV IGASSRSIFS RGQSLSSRIS DSTPSFCTIY AVSKGKLLSV RPSNSEINGS SSAGDSYTSC
201: SITSSTVHTS SSLTERSEPD SSSSYSHFRS PSLPMQRFRA LSHINQNFPH RRACSNVSVH HNSLSLDFGD GEDDVRSCPQ GTYLTDGDDL TSSFRSLVTD
301: NYTTADDQAS ISGALTDSSS RYETDINFEL EKLRTELRHT RGMYAVAQTE VIDASRKINE LHKRRLEEDV KLREICLKEE EVKELARKEN EKYEAAKREA
401: DYVKECAERE AAQRKEAELL ALREAKEKDK LENALTGQAH QYQEFTWEEI VSSTSSFDEN LKIGMGGYGT VYKCSLHHTT VAVKVLHSEG SHLTKQYQQE
501: LEILSKISHP HLLILLGVCP DRGCLVYEFM ENGSLEERLF RKHDTPPIPW FDRYRIAWEV ASALAFLHNS KPNPVIHRDL KPANILLDRN FVSKIGDVGL
601: STMINLDAAL STIYKDTGPV GTLCYIDPEY QRTGLISPTS DIYAFGMVLL QLLTAKAAMG LPHIVETAID KDNLTKVLDP EAGKWPIEET KKLAMLALKC
701: TELYRRDRPD LKDEILPALE KLKEFADKTR DSASTTKSPP PNYFLCPLLK DIMKDPCVAA DGFTYDRNAI ETWLKEKDIS PMTSLPLAHK NLLPNYALLS
801: AILDWKSR

Best Arabidopsis Sequence Match ( AT4G25160.1 )
(BLAST)

001: MSRSPDKLAL PPPPPPPPSR TVVVALSGSS KSKYVVTWAI EKFATEGNVG FKLLHIHPMI TSVPTPMGNA IPISEVRDDV VTAYRQEILW QSEEMLKPYT
101: KLFVRRKVAV EVLVIESDNV AAAIAEEVTR DSIDRIVIGG SSRSFFSRKA DICSVISALM PNFCTVYVVS KGKLSCVRPS DSDGNATIRE DGSERTNSSS
201: GSSGPTSDSS DVMSSAHDSQ SRPLSLPVRR MQHFPAIAGQ ASVPMETSSV GSDETRCMSL DAEEARDVSS INRSSTDTTS RWTPRRRDYE ERKEAMSSSS
301: SNREYGNFGT RFSWSGMGVD TTHSRASQQA SNMSDALSEQ SYTDNQVNLN FEVEKLRAEL RHVQEMYAVA QTETFDASRK LGELNQRRLE EAIKLEELKL
401: KEYEARELAE KEKQNFEKAR RDAESMRERA EREIAQRREA ERKSARDTKE KEKLEGTLGS PQLQYQHFAW EEIMAATSSF SEELKIGMGA YGAVYKCNLH
501: HTTAVVKVLQ SAENQLSKQF QQELEILSKI RHPHLVLLLG ACPEQGALVY EYMENGSLED RLFQVNNSPP LPWFERFRIA WEVAAALVFL HKSKPKPIIH
601: RDLKPANILL DHNFVSKVGD VGLSTMVQVD PLSTKFTIYK QTSPVGTLCY IDPEYQRTGR ISSKSDIYSF GMILLQLLTA KPAIALTHFV ESAMDSNDEF
701: LKILDQKAGN WPIEETRELA ALALCCTELR GKDRPDLKDQ ILPALENLKK VAEKARNSFS GVSTQPPTHF ICPLLKDVMN EPCVAADGYT YDRHAIEEWL
801: KEHNTSPMTD SPLHSKNLLP NYTLYTAIME WRSTR

Arabidopsis Description

PUB35U-box domain-containing protein 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW11]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.