Factsheet for VIT_06s0004g04580.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23063	Soybean	plastid	60.89	62.0
KRH10267	Soybean	plastid	60.17	61.57
KRH29803	Soybean	cytosol	56.58	60.18
Solyc11g065950.1.1	Tomato	plastid	54.55	53.33
GSMUA_Achr10P...	Banana	cytosol	47.37	45.21
KXG26353	Sorghum	plastid	43.78	44.63
TraesCS2D01G076700.1	Wheat	plastid	41.87	44.53
TraesCS2A01G079300.1	Wheat	plastid	41.51	43.92
Os10t0100500-01	Rice	plastid	42.46	43.77
TraesCS2B01G094100.1	Wheat	cytosol, plastid	40.79	43.11
HORVU2Hr1G013130.1	Barley	cytosol, plastid	40.19	41.69
VIT_15s0046g02480.t01	Wine grape	cytosol	37.08	35.19
VIT_16s0050g00690.t01	Wine grape	cytosol	32.66	32.5
VIT_16s0013g01920.t01	Wine grape	cytosol	27.39	29.21
VIT_11s0016g01830.t01	Wine grape	plastid	26.55	28.87
VIT_09s0002g01830.t01	Wine grape	cytosol	21.65	28.28
VIT_04s0008g01360.t01	Wine grape	cytosol, nucleus, plastid	23.92	27.32
VIT_11s0065g00390.t01	Wine grape	cytosol	23.92	26.99
VIT_04s0008g02910.t01	Wine grape	cytosol	23.8	24.97
VIT_09s0054g01060.t01	Wine grape	cytosol	22.97	24.65
Bra035078.1-P	Field mustard	cytosol	24.16	16.42
Zm00001d003621_P002	Maize	cytosol, plastid	41.15	16.24
Bra035077.1-P	Field mustard	plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100262227	wikigene:100262227	MapMan:18.4.1.39.2	Gene3D:3.30.200.20	Gene3D:3.30.40.10
Gene3D:3.40.50.620	ProteinID:CCB43577	ProteinID:CCB43577.1	ncoils:Coil	UniProt:F6GV18	EMBL:FN594951
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004842	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR003613
InterPro:IPR013083	InterPro:IPR014729	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100262227	wikigene:LOC100262227	PFAM:PF04564
PFAM:PF07714	ScanProsite:PS00107	PFscan:PS50011	PFscan:PS51698	PANTHER:PTHR27003	PANTHER:PTHR27003:SF30
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	InterPro:Rossmann-like_a/b/a_fold	SMART:SM00504	SUPFAM:SSF52402	SUPFAM:SSF56112
SUPFAM:SSF57850	InterPro:Ser-Thr/Tyr_kinase_cat_dom	UniParc:UPI00021099FB	InterPro:Ubox_domain	ArrayExpress:VIT_06s0004g04580	EnsemblPlantsGene:VIT_06s0004g04580
EnsemblPlants:VIT_06s0004g04580.t01	RefSeq:XP_003632149	RefSeq:XP_003632149.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:5555606..5564132

Molecular Weight (calculated)

93152.2 Da

IEP (calculated)

7.367

GRAVY (calculated)

-0.417

Length

836 amino acids

Sequence
(BLAST)

001: MELLQPSHPP GPPGDRFSGF SPPASFLHGF DQGSPAVASS LSGIVEEGGD RVHVAVGKSV EKAESLLHWT FRRFGSCEIC LVHVHQPSPL IPTLLGKLPA
101: SQANGEVVSA HRREEKKQTN KLLLNYSNIC SRMKVKPSII TIEADHVQKG IVDLVNRHGI RKLVMGGTVP ENCMKVKMSS SKANYAAKKA PEFCEIWFIH
201: KGKHVWTKEA FKAPGFLPPI SHPKTETGED LGFQPECLPS GSSPVSVLSG GDRNGVESEL VRTRVTSSPA LSDSTSRNDP QFSPTSSSTF SGYGSSAEKR
301: SMDSYSKTEE ESLYYQLAEA TIEAEASRNE AFLELLKRQK LESEAMEAIA KVKAFESAHA REVELRKDAE DALRSTIQEQ DKLLEEREKL TREIQKTMRN
401: VALLDSRAQE ANRRCDEATE ELKLIQASIA TLQYEKQKIR RQKMEAMHWL DRWRSRGQAG TSHCNGFIGV FEDLPELAEF SLSDLETATC NFSESFKIGQ
501: GGNGSVYKGE MLDKTVAIKK LHPHNMQGQS EFQREVQVLG KIQHPHLVTL IGASPEAWSL VYEYLPNGSL QDRLFRKSNN SPLTWKVRAR IITEISSALL
601: FLHSCKPEKI VHGNLRPENI LLGSDLRCKI CDFGICRLVS DETLRCPSFR RNAEPKGAFP YEDPELYRTG VLTTKSDIYS FGVIILQLLT GRPPVGLASE
701: VRKAVSCGKL ASILDSSAGV WPTHVASRLA DLALRCCELN SRDRPELKPT LVRELEQLHV SEEQPVPSFF LCPILQDIMH DPHVAADGFT YEKEALLGWL
801: ENGRETSPMT NLRLSHLHLT PNHSLRSTIQ DWLCKS

Best Arabidopsis Sequence Match ( AT2G45910.1 )
(BLAST)

001: MALVSPIPAM GERAGSMRFH GIGSPGSRSS RSGIMDEPVS RLIDEKIFVA VDKHVAKSKS TLIWALQNTG GKKICLIHVH QPSQMIPLMG AKFPVGAVKE
101: EEVRVFREKE REKVHMILDD YLRICQQRGV RAEKMFIEME SIENGIVQLI SELGIRKLVM GAAADRHYSR RMTDLKSRKA IFVRREAPTL CQIWFTCKGY
201: LIHTREATMD DTESEYASPR PSISASDLLQ TFSTPESEHQ HISRVQSTDS VQQLVSNGSS TEQSGRVSDG SLNTDEEERE SDGSEVTGSA TVMSSGHSSP
301: SSFPDGVDDS FNVKIRKATS EAHSSKQEAF AETLRRQKAE KNALDAIRRA KQSESAYSEE LKRRKDTEIA VAKEKERFIT IKNEQEVIME ELQSAMAQKA
401: MLESQIAKSD GTMEKLNQKL DIAVKLLQKL RDEREELQTE RDRALREAEE LRSHAETSTL QLPQYFTDFS FSEIEEATNH FDSTLKIGEG GYGSIYVGLL
501: RHTQVAIKML NPNSSQGPVE YQQEVDVLSK MRHPNIITLI GACPEGWSLV YEYLPGGSLE DRLTCKDNSP PLSWQNRVRI ATEICAALVF LHSNKAHSLV
601: HGDLKPANIL LDSNLVSKLS DFGTCSLLHP NGSKSVRTDV TGTVAYLDPE ASSSGELTPK SDVYSFGIIL LRLLTGRPAL RISNEVKYAL DNGTLNDLLD
701: PLAGDWPFVQ AEQLARLALR CCETVSENRP DLGTEVWRVL EPMRASSGGS SSFHLGRNEH RIAPPYFICP IFQEVMQDPH VAADGFTYEA EAIRAWLDSE
801: HDTSPMTNVK LSHTSLIANH ALRSAIQEWL QHHL

Arabidopsis Description

PUB33U-box domain-containing protein 33 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.