Factsheet for Bra035077.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003621_P002	Maize	cytosol, plastid	7.67	2.12
Bra026707.1-P	Field mustard	cytosol, nucleus, plasma membrane	0.85	0.64
Bra026027.1-P	Field mustard	nucleus	0.68	0.52
Bra008047.1-P	Field mustard	cytosol	0.17	0.26
Bra016035.1-P	Field mustard	cytosol, nucleus, plasma membrane	0.17	0.14
Bra012943.1-P	Field mustard	cytosol	0.17	0.14
Bra002768.1-P	Field mustard	cytosol	0.17	0.13
Bra016596.1-P	Field mustard	plasma membrane	0.17	0.13
Bra035805.1-P	Field mustard	nucleus	0.17	0.13
Bra006836.1-P	Field mustard	plastid	0.17	0.13
Bra040779.1-P	Field mustard	cytosol	0.0	0.0
Bra032100.1-P	Field mustard	cytosol	0.0	0.0
Bra035078.1-P	Field mustard	cytosol	0.0	0.0
VIT_06s0004g04580.t01	Wine grape	cytosol	0.0	0.0
TraesCS2D01G076700.1	Wheat	plastid	0.0	0.0
Bra035539.1-P	Field mustard	cytosol	0.0	0.0
Bra035920.1-P	Field mustard	cytosol	0.0	0.0
Bra038999.1-P	Field mustard	cytosol	0.0	0.0
Bra039305.1-P	Field mustard	plastid	0.0	0.0
TraesCS2A01G079300.1	Wheat	plastid	0.0	0.0
GSMUA_Achr10P...	Banana	cytosol	0.0	0.0
HORVU2Hr1G013130.1	Barley	cytosol, plastid	0.0	0.0
KRH10267	Soybean	plastid	0.0	0.0
Bra025965.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0
TraesCS2B01G094100.1	Wheat	cytosol, plastid	0.0	0.0
KRH23063	Soybean	plastid	0.0	0.0
KRH29803	Soybean	cytosol	0.0	0.0
KXG26353	Sorghum	plastid	0.0	0.0
Os10t0100500-01	Rice	plastid	0.0	0.0
Solyc11g065950.1.1	Tomato	plastid	0.0	0.0
Bra016631.1-P	Field mustard	cytosol	0.0	0.0
Bra004947.1-P	Field mustard	nucleus, plastid	0.0	0.0
Bra007857.1-P	Field mustard	cytosol	0.0	0.0
Bra008387.1-P	Field mustard	nucleus	0.0	0.0
Bra008921.1-P	Field mustard	cytosol	0.0	0.0
Bra012181.1-P	Field mustard	plastid	0.0	0.0
Bra012944.1-P	Field mustard	cytosol	0.0	0.0
Bra013166.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0
Bra013868.1-P	Field mustard	plastid	0.0	0.0
Bra015196.1-P	Field mustard	cytosol	0.0	0.0
Bra015198.1-P	Field mustard	cytosol	0.0	0.0
Bra029318.1-P	Field mustard	cytosol	0.0	0.0
Bra018013.1-P	Field mustard	cytosol	0.0	0.0
Bra019185.1-P	Field mustard	plastid	0.0	0.0
Bra019576.1-P	Field mustard	nucleus	0.0	0.0
Bra020364.1-P	Field mustard	extracellular, plastid	0.0	0.0
Bra020547.1-P	Field mustard	cytosol	0.0	0.0
Bra022543.1-P	Field mustard	plastid	0.0	0.0
Bra023358.1-P	Field mustard	cytosol	0.0	0.0
Bra024016.1-P	Field mustard	cytosol	0.0	0.0
Bra029317.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:1.25.70.10	MapMan:15.6.2.2	EnsemblPlantsGene:Bra035077	EnsemblPlants:Bra035077.1	EnsemblPlants:Bra035077.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	InterPro:IPR038538
UniProt:M4F1Y0	InterPro:MTERF	InterPro:MTERF_sf	PFAM:PF02536	PANTHER:PTHR13068	PANTHER:PTHR13068:SF42
SMART:SM00733	UniParc:UPI0002541C70	SEG:seg	:	:	:

Description

AT1G78930 (E=1e-271) | mitochondrial transcription termination factor-related / mTERF-related

Coordinates

chrA07:-:22049520..22052342

Molecular Weight (calculated)

67116.8 Da

IEP (calculated)

7.788

GRAVY (calculated)

-0.167

Length

587 amino acids

Sequence
(BLAST)

001: MLMELSLNTY ETITLISPPL QSLNFNSNSL FFSPRRLTLS GGRVSVSASF HHGESKPSSD SPQTNHDDQL SLAQVSISVF LRQEIGLSEA DSDFISQNCP
101: KYTRMIVEGV RDLEEWDSWK GNEGLGFSEK VVYMVKQKGD GGGKVAFLES LGLSLSSAMY LAHYVSSESL PKLLDKVKYL KEIFFSGSDE NGLVGTYARR
201: MMLYLSIPID EDVQQTLSFF EKIEARRGGL DMLGSVDASF RFLIESFPRL LLLSEENDMK PLIEFLESVG VPRDCFGKVL LLYPPVMLGK AEEMKRRVAA
301: AMEKVSVVNK DSGRVLMKYP WILSPSIQEN YSRIVSLLES ESVLKTDIDH AIRRWPLLLG CSTSNMKLMI KEFDKLGVRN RRMGKVIPKR PQLLLYKPQE
401: FLKVVAFLED LGFEKEIIGQ ILCRCPEIFG CSIEKTLQKK LSFLTRFGVS TTHFPRIVKK YPEFLLYDAE KTVLPRLKYL MEIGISEREI AFMIRKFSPL
501: LGYSIDNVLR PKLEFLVNNM EKPVREVIDY PRYFSYSLEK RIKPRFWVLK GRNIECTLQE MLGKNDEEFA ADFLGLGELH QTHNENS

Best Arabidopsis Sequence Match ( AT1G78930.1 )
(BLAST)

001: MELLHTSCNF ETLTLISPPL KSCNFSSSSL FFSPRRVTLF PAYHSGRVTV SASLQHGDSN FSSNSSQTNQ EAQNSIAGFL RRDTGLSEAD SDFISSNCPK
101: YTRMIVEGVR DLEEWNSWKG SGESERVEEG LGFKEKVIYM VKQKGDGGKV AFLESLGLSL SSAMYLAHYV SSESLPILLD KVKYLKEIFF SGSDEKGLVG
201: KYARRMMLYL SIPIDEDVQQ TLSFFEKIEA RRGGLDMLGS VDASFRFLLE SFPRLLLLSE ENDMKPMVEF LESIGIPKYC LGKVLLLYPP IMLGKTEEIK
301: RRVATAMEKV SVVNKDSGKL LLKYPWILSP SIQENYSHIG SFFYSESVLK MDIDHAIRRW PLLLGCSASN MEMMVKEFDK LGVRDKRMGK VIPKMPQLLL
401: CKPQEFLKVV CFLEDLGFQK EIVGQILCRC PEIFGCSIEK TLQKKLIFLT RFGVSTTHFP RIIKKYPEFL IYDADKTVLP RLKYLMEIGI SEREIAFMIR
501: KFSPILGYSI DKVLRPKFEF LVNSMEKPVR EVIEYPRYFS YSLEKRIKPR FRVLKGRNIE CTLQEMLGKN DEEFAADFLG LGELQTHSEI S

Arabidopsis Description

Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:Q0WRV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.