Factsheet for Bra020364.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 5
plasma membrane 6
extracellular 5
endoplasmic reticulum 4
vacuole 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012181.1-P	Field mustard	plastid	99.5	19.6
Bra008047.1-P	Field mustard	cytosol	1.01	0.51
Bra006836.1-P	Field mustard	plastid	1.51	0.38
Bra025965.1-P	Field mustard	cytosol, nucleus, plastid	1.01	0.35
Bra040779.1-P	Field mustard	cytosol	1.01	0.31
Bra013166.1-P	Field mustard	cytosol, nucleus, plastid	1.01	0.29
Bra016035.1-P	Field mustard	cytosol, nucleus, plasma membrane	1.01	0.29
Bra023358.1-P	Field mustard	cytosol	1.01	0.29
Bra008921.1-P	Field mustard	cytosol	1.01	0.29
Bra020547.1-P	Field mustard	cytosol	1.01	0.28
Bra035539.1-P	Field mustard	cytosol	1.01	0.28
Bra012943.1-P	Field mustard	cytosol	1.01	0.28
Bra016631.1-P	Field mustard	cytosol	1.01	0.27
Bra002768.1-P	Field mustard	cytosol	1.01	0.26
Bra008387.1-P	Field mustard	nucleus	1.01	0.26
Bra015198.1-P	Field mustard	cytosol	1.01	0.26
Bra032100.1-P	Field mustard	cytosol	1.01	0.26
Bra026027.1-P	Field mustard	nucleus	1.01	0.26
Bra016596.1-P	Field mustard	plasma membrane	1.01	0.26
Bra035805.1-P	Field mustard	nucleus	1.01	0.26
Bra024016.1-P	Field mustard	cytosol	1.01	0.26
Bra026707.1-P	Field mustard	cytosol, nucleus, plasma membrane	1.01	0.26
Bra022543.1-P	Field mustard	plastid	1.01	0.25
Bra035920.1-P	Field mustard	cytosol	1.01	0.25
Bra029318.1-P	Field mustard	cytosol	1.01	0.25
Bra007857.1-P	Field mustard	cytosol	1.01	0.25
Bra019185.1-P	Field mustard	plastid	1.01	0.25
Bra012944.1-P	Field mustard	cytosol	1.01	0.25
Bra038999.1-P	Field mustard	cytosol	1.01	0.24
Bra013868.1-P	Field mustard	plastid	1.01	0.24
Bra029317.1-P	Field mustard	cytosol, nucleus, plastid	1.01	0.23
Bra035078.1-P	Field mustard	cytosol	1.01	0.16
Bra019576.1-P	Field mustard	nucleus	0.5	0.16
Bra004947.1-P	Field mustard	nucleus, plastid	0.5	0.12
Bra018013.1-P	Field mustard	cytosol	0.5	0.12
Bra039305.1-P	Field mustard	plastid	0.5	0.12
Bra035077.1-P	Field mustard	plastid	0.0	0.0
Bra015196.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Bra020364.1	EnsemblPlants:Bra020364.1-P	EnsemblPlantsGene:Bra020364	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002543002
UniProt:M4DV21	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chrA02:-:6417893..6419128

Molecular Weight (calculated)

21580.3 Da

IEP (calculated)

8.658

GRAVY (calculated)

-0.051

Length

199 amino acids

Sequence
(BLAST)

001: MRVSAQSGVG GFTFAFLSSS VCCLSDYGAH LRYARFSGLG FGSGVCSARE EFDSDGFSAF SGLSVRRATA FEENASVLDW CYISVGTGGG FSSTDISFSV
101: LDSFRRSGGS HQSLAVMVPR LVTLTSQHHL WFRLDFGGGV RVIIVQVRVS RTTRLLFARA SLKDDIARET RSSEASYTGN DPGRPRHPWQ HGESLFPVG

Best Arabidopsis Sequence Match ( AT3G52300.1 )
(BLAST)

001: MSGAGKKIAD VAFKASRTID WDGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDYYRKG IGAGIVDKYK EAYDSIEIPK YVDKVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIAD VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDNWGY

Arabidopsis Description

ATPQATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FT52]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.