Factsheet for Bra017406.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	cytosol
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001650.1-P
Bra012351.1-P
Bra022192.1-P
Bra024285.1-P
Bra024548.1-P
Bra037773.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02950.1	Bra012351.1-P	AT1G22920.1	21798944
AT2G02950.1	Bra024548.1-P	AT1G22920.1	21798944
AT2G02950.1	Bra001650.1-P	AT2G18790.1	10348744
AT2G02950.1	Bra022192.1-P	AT2G18790.1	10348744
AT2G02950.1	Bra024285.1-P	AT5G64330.1	16777956
AT2G02950.1	Bra037773.1-P	AT5G64330.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17423	Canola	plastid	96.18	95.95
Bra024800.1-P	Field mustard	nucleus, plastid	46.54	61.32
AT2G02950.1	Thale cress	plastid	64.2	61.28
Bra026572.1-P	Field mustard	plastid	59.9	60.48
Bra019666.1-P	Field mustard	plastid	42.72	41.15
KRH74851	Soybean	nucleus, plastid	29.83	25.36
KRH70717	Soybean	nucleus	29.36	24.95
VIT_01s0026g02330.t01	Wine grape	nucleus	30.79	24.71
Bra016540.1-P	Field mustard	cytoskeleton, cytosol, nucleus	20.76	24.1
KRG99090	Soybean	cytosol, nucleus, peroxisome	28.4	23.61
KRH45905	Soybean	nucleus	28.4	22.33
GSMUA_Achr7P11570_001	Banana	cytosol, plastid	20.76	21.01
GSMUA_Achr10P...	Banana	nucleus	16.71	20.0

Protein Annotations

EnsemblPlants:Bra017406.1	EnsemblPlants:Bra017406.1-P	EnsemblPlantsGene:Bra017406	PANTHER:PTHR33781	PANTHER:PTHR33781:SF4	SEG:seg
UniParc:UPI00025422BA	UniProt:M4DLM5	MapMan:26.1.2.2.3	:	:	:

Description

AT2G02950 (E=3e-131) PKS1 | PKS1 (PHYTOCHROME KINASE SUBSTRATE 1); protein binding

Coordinates

chrA09:+:15040141..15041400

Molecular Weight (calculated)

46124.1 Da

IEP (calculated)

8.466

GRAVY (calculated)

-0.703

Length

419 amino acids

Sequence
(BLAST)

001: MVSLTSSSSS TPKISFDFTK NNNNTSLNVP VSSFSSDSSC LRSKEEAIVT TKKDIEPCKT LNSNINPKDD QEFRDENKMV NKALEDPEIG VFGAEKYFNG
101: DMDSDQSSTV LSLTNPEAER LVDDLKQSEK KSTGAPSVHS EASCNSQSML LQNKLANSCN GSVQEKKNNS GQIQKVVNNK KSFLNLGCKC ACSDGMSVDV
201: DDKILVKRSS DLINIQKQEE LVQRKSLEVL GSPVEKKRVV AQKKLTLPPR ESRTEEEDTT SEGSDTSSDL FEIDNLTGKP KTFLARQGSD PTFYAPSEVS
301: IEWSIVTASA ADFSIMSECA TSPLGRNQFL QIPPRIPTKT APHRLKPSNA SGGFLSCKSH KSVMVSGDSD RRSSMNKKKT SLAYVPRHVQ VMETTKRKSL
401: ETRRRISNSS PSPLLYSQY

Best Arabidopsis Sequence Match ( AT2G02950.1 )
(BLAST)

001: MVTLTPSSAS TPKTSFDFMK NNNSHSSLYV SSSSYLSSKE DALVTTKKLM EPSKTLNMSI NPKQEEFGDE KKMVKKAPED PEIGVFGAEK YFNGDMDSDQ
101: GSSVLSLTNP EVERTVVDSK QSAKKSTGTP SVRSESSWNS QSVLLQNKLV NSCNSSFKEK KNSNGQIQKV TNNKKSFLAN LGCKCACSDG DSVDVEEKTS
201: VKRSADPNIS VITMRSSADM NTELIKIQKQ EELSQRKSLE VFGSPVAIEK KSSVVQKKLP LPPWKSRTEE DDTKSEGSDS SSDLFEIEGL TGNPKPFLTR
301: QGSDPASPTC YAPSEVSVEW SIVTASAADF SVMSECATSP VRRNRPTQIP RIPITAKSAP QRRKSSSSSG GNGFLMSCKS HKSVMVSGDL DRRSSMNKTQ
401: PSYVPRFPME TTKPKSFETR RRISNSSISH TQSSLLYSQ

Arabidopsis Description

PKS1Protein PHYTOCHROME KINASE SUBSTRATE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SWI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.