Factsheet for HORVU2Hr1G072660.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

plastid: 17675669
plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

msms PMID: 17675669 doi

S Frigerio, C Campoli, S Zorzan, LI Fantoni, C Crosatti, F Drepper, W Haehnel, L Cattivelli, T Morosinotto, R Bassi

LGBP, UMR 6191 CEA-CNRS-Université de la Méditerranée, Marseille 13288, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
BAV58133
BAV58145
BAV58157
HORVU1Hr1G093390.2
HORVU2Hr1G034000.1
HORVU2Hr1G096060.1
HORVU3Hr1G027650.2
HORVU3Hr1G045000.1
HORVU3Hr1G050700.1
HORVU3Hr1G054240.2
HORVU3Hr1G113900.1
HORVU4Hr1G059430.1
HORVU5Hr1G072290.2
HORVU6Hr1G001790.1
HORVU6Hr1G039040.1
HORVU6Hr1G044670.1
HORVU7Hr1G089590.1
HORVU7Hr1G089600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52300.1	HORVU1Hr1G093390.2	AT2G42580.1	19000166
AT3G52300.1	HORVU3Hr1G027650.2	AT2G42580.1	19000166
AT3G52300.1	HORVU3Hr1G054240.2	AT2G42580.1	19000166
AT3G52300.1	BAV58133	ATMG00480.1	12681508
AT3G52300.1	HORVU2Hr1G034000.1	ATMG00480.1	12681508
AT3G52300.1	HORVU4Hr1G059430.1	ATMG00480.1	12681508
AT3G52300.1	HORVU6Hr1G039040.1	ATMG00480.1	12681508
AT3G52300.1	HORVU7Hr1G089600.1	ATMG00480.1	12681508
AT3G52300.1	BAV58145	ATMG00640.1	12681508
AT3G52300.1	HORVU2Hr1G096060.1	ATMG00640.1	12681508
AT3G52300.1	HORVU3Hr1G045000.1	ATMG00640.1	12681508
AT3G52300.1	HORVU3Hr1G050700.1	ATMG00640.1	12681508
AT3G52300.1	HORVU3Hr1G113900.1	ATMG00640.1	12681508
AT3G52300.1	HORVU5Hr1G072290.2	ATMG00640.1	12681508
AT3G52300.1	HORVU6Hr1G001790.1	ATMG00640.1	12681508
AT3G52300.1	HORVU6Hr1G044670.1	ATMG00640.1	12681508
AT3G52300.1	BAV58157	ATMG01080.1	12681508
AT3G52300.1	HORVU7Hr1G089590.1	ATMG01080.1	12681508

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G291300.1	Wheat	cytosol, plastid	94.01	94.01
TraesCS2B01G310000.1	Wheat	cytosol	94.01	94.01
TraesCS2A01G293700.1	Wheat	cytosol, golgi, plastid, unclear	93.41	93.41
KXG35044	Sorghum	cytosol	92.22	90.59
Os08t0478200-01	Rice	mitochondrion, plastid	90.42	89.35
GSMUA_Achr10P...	Banana	cytosol	74.25	85.52
GSMUA_Achr7P09760_001	Banana	cytosol	83.23	82.25
Solyc11g072450.1.1	Tomato	plastid	82.63	82.14
PGSC0003DMT400070407	Potato	cytosol	82.04	81.55
VIT_13s0019g03860.t01	Wine grape	cytosol	80.84	80.36
PGSC0003DMT400059780	Potato	cytosol	80.84	80.36
CDX95329	Canola	cytosol	79.64	79.17
KRG91849	Soybean	endoplasmic reticulum	79.64	79.17
Bra006918.1-P	Field mustard	cytosol	79.04	78.57
CDY23204	Canola	cytosol	79.04	78.57
CDX90607	Canola	cytosol	79.04	78.57
CDX78082	Canola	cytosol	79.04	78.57
CDX73643	Canola	cytosol	79.04	78.57
Bra012809.1-P	Field mustard	cytosol	79.04	78.57
AT3G52300.1	Thale cress	cytosol, mitochondrion	79.04	78.57
CDY29076	Canola	cytosol	78.44	77.98
Bra033442.1-P	Field mustard	cytosol	77.84	77.38
Zm00001d031825_P001	Maize	cytosol	82.04	76.97
KRH34917	Soybean	endoplasmic reticulum, mitochondrion	77.25	76.79
HORVU2Hr1G072650.1	Barley	cytosol	100.0	76.26
Solyc06g005010.1.1	Tomato	plastid	30.54	59.3
Solyc06g005020.1.1	Tomato	plastid	46.11	53.85

Protein Annotations

Gene3D:1.20.58.880	MapMan:2.4.6.1.4	InterPro:ATP_synth_F0_dsu_mt	InterPro:ATP_synth_F0_dsu_sf_mt	ncoils:Coil	GO:GO:0000276
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005743	GO:GO:0006139	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015078	GO:GO:0015986	GO:GO:0016020
EnsemblPlantsGene:HORVU2Hr1G072660	EnsemblPlants:HORVU2Hr1G072660.2	InterPro:IPR036228	UniProt:M0VBA1	PFAM:PD968187	PFAM:PF05873
PIRSF:PIRSF005514	PANTHER:PTHR12700	SUPFAM:SSF161065	UniParc:UPI000224BDE0	SEG:seg	:

Description

ATP synthase subunit d, mitochondrial [Source:UniProtKB/TrEMBL;Acc:M0VBA1]

Coordinates

chrchr2H:-:521460787..521462956

Molecular Weight (calculated)

19582.4 Da

IEP (calculated)

5.924

GRAVY (calculated)

-0.877

Length

167 amino acids

Sequence
(BLAST)

001: MSGVKKVADV AAKAGKAIDW DGMAKMLVSE EARKEFANLR RTFEDVNHQL QTKFSQEPQP IDWEYYRKGI GSKVVDMYKE AYDSIEIPKY VDTVTPQYKP
101: KFDALLVELK EAEKTSLKES ERIEKEIAEM KEMKKKISTM TADEYFAKHP ELKKKFDDEM RNDYWGY

Best Arabidopsis Sequence Match ( AT3G52300.1 )
(BLAST)

001: MSGAGKKIAD VAFKASRTID WDGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDYYRKG IGAGIVDKYK EAYDSIEIPK YVDKVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIAD VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDNWGY

Arabidopsis Description

ATPQATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FT52]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.