CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52300.1	EES01073	AT2G42580.1	19000166
AT3G52300.1	EES02247	AT2G42580.1	19000166
AT3G52300.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G291300.1	Wheat	cytosol, plastid	91.18	92.81
TraesCS2B01G310000.1	Wheat	cytosol	91.18	92.81
TraesCS2A01G293700.1	Wheat	cytosol, golgi, plastid, unclear	90.59	92.22
HORVU2Hr1G072660.2	Barley	cytosol, plasma membrane, plastid	90.59	92.22
EES15140	Sorghum	cytosol	90.59	91.12
GSMUA_Achr10P...	Banana	cytosol	72.94	85.52
GSMUA_Achr7P09760_001	Banana	cytosol	81.76	82.25
Solyc11g072450.1.1	Tomato	plastid	78.82	79.76
PGSC0003DMT400070407	Potato	cytosol	78.24	79.17
VIT_13s0019g03860.t01	Wine grape	cytosol	77.06	77.98
KRG91849	Soybean	endoplasmic reticulum	77.06	77.98
PGSC0003DMT400059780	Potato	cytosol	75.88	76.79
Bra006918.1-P	Field mustard	cytosol	74.71	75.6
CDY23204	Canola	cytosol	74.71	75.6
CDX95329	Canola	cytosol	74.71	75.6
CDX90607	Canola	cytosol	74.71	75.6
CDX78082	Canola	cytosol	74.71	75.6
CDX73643	Canola	cytosol	74.71	75.6
Bra012809.1-P	Field mustard	cytosol	74.71	75.6
AT3G52300.1	Thale cress	cytosol, mitochondrion	74.71	75.6
CDY29076	Canola	cytosol	74.12	75.0
KRH34917	Soybean	endoplasmic reticulum, mitochondrion	74.12	75.0
Bra033442.1-P	Field mustard	cytosol	73.53	74.4
HORVU2Hr1G072650.1	Barley	cytosol	90.59	70.32
Solyc06g005010.1.1	Tomato	plastid	28.82	56.98
Solyc06g005020.1.1	Tomato	plastid	43.53	51.75

Protein Annotations

Gene3D:1.20.58.880	MapMan:2.4.6.1.4	UniProt:A0A1B6QAW3	InterPro:ATP_synth_F0_dsu_mt	InterPro:ATP_synth_F0_dsu_sf_mt	ncoils:Coil
GO:GO:0000276	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006139	GO:GO:0006810	GO:GO:0006811
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015078	GO:GO:0015986
GO:GO:0015992	GO:GO:0016020	InterPro:IPR036228	EnsemblPlants:KXG35044	ProteinID:KXG35044	ProteinID:KXG35044.1
PFAM:PD968187	PFAM:PF05873	PIRSF:PIRSF005514	PANTHER:PTHR12700	EnsemblPlantsGene:SORBI_3002G124900	SUPFAM:SSF161065
UniParc:UPI00081AC039	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:16878217..16880818

Molecular Weight (calculated)

19766.5 Da

IEP (calculated)

5.470

GRAVY (calculated)

-0.865

Length

170 amino acids

Sequence
(BLAST)

001: MSGNGVVKKV SDAATKAGKA IDWDGLAKML VSDEARKEFA NLRRTFEDVN HQLQTKFSQE PQPIDWEYYK KGIGSKVVDM YKEAYESIEI PKYVDTVTPQ
101: YKPKFDALLV EMKEAEKASL KESEKIEKEI AEMKEMKKKI STMTADEYFA KHPELKQKFD DEIRNDYWGY

Best Arabidopsis Sequence Match ( AT3G52300.1 )
(BLAST)

001: MSGAGKKIAD VAFKASRTID WDGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDYYRKG IGAGIVDKYK EAYDSIEIPK YVDKVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIAD VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDNWGY

Arabidopsis Description

ATPQATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FT52]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.