Factsheet for Solyc11g072450.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 20496099
plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 20496099 doi

D Dahal, A Pich, HP Braun, K Wydra

Institute for Plant Diseases and Plant Protection, Faculty of Natural Sciences, Leibniz Universität Hannover, Herrenhäuser Str.2, 30419 Hannover, Germany. dahal@ipp.uni-hannover.de

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g042990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52300.1	Solyc06g042990.1.1	ATMG00640.1	12681508

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070407	Potato	cytosol	99.4	99.4
GSMUA_Achr10P...	Banana	cytosol	76.19	88.28
KRG91849	Soybean	endoplasmic reticulum	87.5	87.5
VIT_13s0019g03860.t01	Wine grape	cytosol	86.9	86.9
KRH34917	Soybean	endoplasmic reticulum, mitochondrion	85.12	85.12
Bra006918.1-P	Field mustard	cytosol	83.33	83.33
AT3G52300.1	Thale cress	cytosol, mitochondrion	83.33	83.33
CDX78082	Canola	cytosol	83.33	83.33
CDX73643	Canola	cytosol	83.33	83.33
HORVU2Hr1G072660.2	Barley	cytosol, plasma membrane, plastid	82.14	82.63
CDX95329	Canola	cytosol	82.14	82.14
CDY23204	Canola	cytosol	82.14	82.14
CDX90607	Canola	cytosol	82.14	82.14
Bra012809.1-P	Field mustard	cytosol	82.14	82.14
CDY29076	Canola	cytosol	81.55	81.55
Bra033442.1-P	Field mustard	cytosol	80.95	80.95
TraesCS2A01G293700.1	Wheat	cytosol, golgi, plastid, unclear	80.36	80.84
TraesCS2D01G291300.1	Wheat	cytosol, plastid	79.76	80.24
TraesCS2B01G310000.1	Wheat	cytosol	79.76	80.24
Os08t0478200-01	Rice	mitochondrion, plastid	80.36	79.88
EES15140	Sorghum	cytosol	80.36	79.88
GSMUA_Achr7P09760_001	Banana	cytosol	79.76	79.29
KXG35044	Sorghum	cytosol	79.76	78.82
Zm00001d031825_P001	Maize	cytosol	77.98	73.6
Solyc06g005010.1.1	Tomato	plastid	36.31	70.93
HORVU2Hr1G072650.1	Barley	cytosol	82.14	63.01
Solyc06g005020.1.1	Tomato	plastid	51.19	60.14

Protein Annotations

Gene3D:1.20.58.880	MapMan:2.4.6.1.4	InterPro:ATP_synth_F0_dsu_mt	InterPro:ATP_synth_F0_dsu_sf_mt	ncoils:Coil	GO:GO:0000274
GO:GO:0000276	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006139	GO:GO:0006810
GO:GO:0006811	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0015078	GO:GO:0015986	GO:GO:0015992	GO:GO:0016020
GO:GO:0016787	GO:GO:0046933	GO:GO:0099132	InterPro:IPR036228	UniProt:K4DAV2	PFAM:PD968187
PFAM:PF05873	PIRSF:PIRSF005514	PANTHER:PTHR12700	SUPFAM:SSF161065	EnsemblPlantsGene:Solyc11g072450.1	EnsemblPlants:Solyc11g072450.1.1
UniParc:UPI0002769CB0	:	:	:	:	:

Description

ATP synthase subunit d, mitochondrial [Source:UniProtKB/TrEMBL;Acc:K4DAV2]

Coordinates

chr11:-:55622183..55626949

Molecular Weight (calculated)

19794.4 Da

IEP (calculated)

5.052

GRAVY (calculated)

-0.887

Length

168 amino acids

Sequence
(BLAST)

001: MSGTVKKIAD VTFKAGRTID WDGMAKLLVT DEARKEFSNL RRAFDDVNSQ LQTKFSQEPE PINWEYYRKG IGSRLVDMYK EAYESIEIPK FEDTVTPQYK
101: PKFDALLVEL KEAEKQSLKE SERLEKEVAE VQELKKKLST MTAEEYFAKH PELKKKFDDE IRNDYWGY

Best Arabidopsis Sequence Match ( AT3G52300.1 )
(BLAST)

001: MSGAGKKIAD VAFKASRTID WDGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDYYRKG IGAGIVDKYK EAYDSIEIPK YVDKVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIAD VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDNWGY

Arabidopsis Description

ATPQATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FT52]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.