Factsheet for Solyc06g042990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 1
mitochondrion 8

Predictors

GFP

MS/MS

Papers

plastid: 26371478

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G044670.1	Barley	cytosol	44.12	42.25
GSMUA_AchrUn_...	Banana	mitochondrion	39.71	33.33
PGSC0003DMT400079466	Potato	cytosol	69.12	29.94
HORVU2Hr1G096060.1	Barley	cytosol, extracellular	41.18	29.79
ATMG00640.1	Thale cress	extracellular	61.76	21.88
CDY45530	Canola	endoplasmic reticulum	60.29	21.35
CDY17569	Canola	extracellular	60.29	19.52
KRH04770	Soybean	mitochondrion	55.88	19.49
PGSC0003DMT400068212	Potato	peroxisome, plasma membrane, plastid	67.65	18.78
BAC19854	Rice	plasma membrane	52.94	18.27
TraesCS7A01G011000.1	Wheat	cytosol	50.0	17.89
TraesCS7A01G526300.1	Wheat	mitochondrion	50.0	17.71
TraesCS7A01G099300.1	Wheat	golgi, unclear	50.0	17.71
HORVU3Hr1G050700.1	Barley	cytosol	50.0	17.71
BAV58145	Barley	cytosol	50.0	17.71
TraesCS4D01G236200.1	Wheat	golgi, plastid, unclear	50.0	17.71
TraesCS3A01G491800.1	Wheat	cytosol	50.0	17.71
TraesCS4B01G147700.1	Wheat	mitochondrion	50.0	17.71
TraesCS7B01G194300.1	Wheat	cytosol	48.53	17.19
TraesCS6B01G232700.1	Wheat	cytosol	48.53	17.19
TraesCS6B01G233300.1	Wheat	cytosol	50.0	17.17
GRMZM5G884912_P01	Maize	plasma membrane, plastid	50.0	15.53
Solyc02g021390.1.1	Tomato	extracellular	4.41	4.84
HORVU3Hr1G045000.1	Barley	extracellular	0.0	0.0
HORVU6Hr1G001790.1	Barley	cytosol, peroxisome	0.0	0.0
HORVU5Hr1G072290.2	Barley	cytosol	0.0	0.0
HORVU3Hr1G113900.1	Barley	extracellular	0.0	0.0

Protein Annotations

MapMan:2.4.6.1.2	InterPro:ATP_synth_Bsub_B/MI25	GO:GO:0000276	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015078	GO:GO:0015986
GO:GO:0016020	UniProt:K4C553	PFAM:PF05405	PANTHER:PTHR37774	EnsemblPlantsGene:Solyc06g042990.1	EnsemblPlants:Solyc06g042990.1.1
UniParc:UPI000276634F	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:30370421..30370627

Molecular Weight (calculated)

7724.7 Da

IEP (calculated)

10.299

GRAVY (calculated)

-0.118

Length

68 amino acids

Sequence
(BLAST)

1: MTRCVPKCKN TVQALLCRNL NFKLATLPNA TSSSRIPLRN DIVIKMQILV GKGSCHMYNS KEERVEFI

Best Arabidopsis Sequence Match ( ATMG00640.1 )
(BLAST)

001: MRLSITNMDG RKMLFAAILS ICALSSKKIS IYNEEMIVAL CFIGFIIFSR KSLGTTFKVT LDGSLQAIQE ESQQFPNPNE VVPPESNEQQ RLLRISLRIC
101: GTVVESLPMA RCAPKCEKTV QALLCRNLNV KSATLTNATS SRRIRFQDDL VTKFYTLVGK QFAYSCISKA ERVEFIRESL VVLRMVRGGV FS

Arabidopsis Description

ORF25hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding [Source:TAIR;Acc:ATMG00640]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.