Factsheet for PGSC0003DMT400068212

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, plasma membrane

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
mitochondrion 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane, plastid
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079466	Potato	cytosol	53.47	83.44
HORVU6Hr1G044670.1	Barley	cytosol	22.86	78.87
KRH04770	Soybean	mitochondrion	56.73	71.28
ATMG00640.1	Thale cress	extracellular	55.51	70.83
CDY45530	Canola	endoplasmic reticulum	55.1	70.31
Solyc06g042990.1.1	Tomato	mitochondrion, plastid	18.78	67.65
BAV58145	Barley	cytosol	47.35	60.42
TraesCS7A01G526300.1	Wheat	mitochondrion	47.35	60.42
TraesCS4D01G236200.1	Wheat	golgi, plastid, unclear	47.35	60.42
HORVU3Hr1G050700.1	Barley	cytosol	47.35	60.42
TraesCS7A01G099300.1	Wheat	golgi, unclear	46.94	59.9
TraesCS4B01G147700.1	Wheat	mitochondrion	46.94	59.9
TraesCS7A01G011000.1	Wheat	cytosol	46.12	59.47
TraesCS6B01G232700.1	Wheat	cytosol	46.53	59.38
TraesCS7B01G194300.1	Wheat	cytosol	46.12	58.85
TraesCS3A01G491800.1	Wheat	cytosol	45.31	57.81
BAC19854	Rice	plasma membrane	46.12	57.36
TraesCS6B01G233300.1	Wheat	cytosol	46.12	57.07
CDY17569	Canola	extracellular	48.16	56.19
HORVU2Hr1G096060.1	Barley	cytosol, extracellular	20.82	54.26
GRMZM5G884912_P01	Maize	plasma membrane, plastid	44.49	49.77
HORVU5Hr1G072290.2	Barley	cytosol	19.59	49.48
HORVU3Hr1G113900.1	Barley	extracellular	17.96	48.89
GSMUA_AchrUn_...	Banana	mitochondrion	14.69	44.44
HORVU3Hr1G045000.1	Barley	extracellular	9.8	38.1
HORVU6Hr1G001790.1	Barley	cytosol, peroxisome	4.49	21.15

Protein Annotations

MapMan:2.4.6.1.2	InterPro:ATP_synth_Bsub_B/MI25	GO:GO:0000276	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015078	GO:GO:0015986
GO:GO:0016020	UniProt:M1CIM1	PFAM:PF05405	EnsemblPlantsGene:PGSC0003DMG400026520	PGSC:PGSC0003DMG400026520	EnsemblPlants:PGSC0003DMT400068212
PANTHER:PTHR37774	UniParc:UPI000296D2D4	SEG:seg	:	:	:

Description

ATP synthase protein MI25 [Source:PGSC_GENE;Acc:PGSC0003DMG400026520]

Coordinates

chr6:-:48178565..48182897

Molecular Weight (calculated)

27811.2 Da

IEP (calculated)

8.813

GRAVY (calculated)

-0.064

Length

245 amino acids

Sequence
(BLAST)

001: MNWLIRKRPC SLEDLSRVCD LVAKKTSYEG LGRVGSGWVG SGRVGSLCCC CIVGNCCGEL SFWICMLLLM YGSVLGWEFE KLRMEWAFEN CFIIFSRKSL
101: GNTFKVTLDG RIQAIQEESQ QFPNPNEVVP PESNEQQRLL RISLRICGTV VESLPMARCA PKCEKTVQAL LCRNLNVKSA TLPNATSSRR IRLQDDIAIK
201: MHVLVGKRFY PRCSSKAERV EFIRESLVVL RMVRVGDSLK NKEFE

Best Arabidopsis Sequence Match ( ATMG00640.1 )
(BLAST)

001: MRLSITNMDG RKMLFAAILS ICALSSKKIS IYNEEMIVAL CFIGFIIFSR KSLGTTFKVT LDGSLQAIQE ESQQFPNPNE VVPPESNEQQ RLLRISLRIC
101: GTVVESLPMA RCAPKCEKTV QALLCRNLNV KSATLTNATS SRRIRFQDDL VTKFYTLVGK QFAYSCISKA ERVEFIRESL VVLRMVRGGV FS

Arabidopsis Description

ORF25hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding [Source:TAIR;Acc:ATMG00640]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.