Factsheet for TraesCS4D01G236200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, plastid

Predictor Summary:

mitochondrion 2
cytosol 2
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid, unclear
Any Predictor:	cytosol, extracellular, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

plastid: 22160430
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G526300.1	Wheat	mitochondrion	98.44	98.44
BAV58145	Barley	cytosol	97.92	97.92
HORVU3Hr1G050700.1	Barley	cytosol	97.92	97.92
TraesCS6B01G232700.1	Wheat	cytosol	97.4	97.4
TraesCS7B01G194300.1	Wheat	cytosol	94.79	94.79
BAC19854	Rice	plasma membrane	88.54	86.29
GRMZM5G884912_P01	Maize	plasma membrane, plastid	90.1	79.0
KRH04770	Soybean	mitochondrion	76.04	74.87
CDY45530	Canola	endoplasmic reticulum	68.75	68.75
ATMG00640.1	Thale cress	extracellular	66.67	66.67
KRH39429	Soybean	extracellular	33.33	64.65
PGSC0003DMT400079466	Potato	cytosol	48.44	59.24
CDY17569	Canola	extracellular	59.9	54.76
Solyc06g042990.1.1	Tomato	mitochondrion, plastid	17.71	50.0
GSMUA_AchrUn_...	Banana	mitochondrion	20.83	49.38
PGSC0003DMT400068212	Potato	peroxisome, plasma membrane, plastid	60.42	47.35
Solyc02g021390.1.1	Tomato	extracellular	12.5	38.71
CDX89718	Canola	nucleus	35.42	25.19

Protein Annotations

EnsemblPlants:TraesCS4D01G236200.1	EnsemblPlantsGene:TraesCS4D01G236200	GO:GO:0000276	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015078	GO:GO:0015986
GO:GO:0016020	InterPro:ATP_synth_Bsub_B/MI25	PANTHER:PTHR37774	PFAM:PF05405	MapMan:2.4.6.1.2	:

Description

No Description!

Coordinates

chr4D:-:398049926..398050504

Molecular Weight (calculated)

21654.5 Da

IEP (calculated)

9.794

GRAVY (calculated)

0.007

Length

192 amino acids

Sequence
(BLAST)

001: MRFLSTDMKD RNMLFAAIPS ICASSPKKIS IYNEEMIVAR CFIGFLIFSR KSLGKTFKET LDGRIESIQE ELLQFFNPNE VIPEESNEQQ RLLRISLRIC
101: STVVESLPTA RCAPKCEKTV QALLCRNLNV KSATLLNATS SRRIRLQDDI VTGFHFSVSE RFVSGSTFKA STIDLIREGL IVLRKVRVGG SI

Best Arabidopsis Sequence Match ( ATMG00640.1 )
(BLAST)

001: MRLSITNMDG RKMLFAAILS ICALSSKKIS IYNEEMIVAL CFIGFIIFSR KSLGTTFKVT LDGSLQAIQE ESQQFPNPNE VVPPESNEQQ RLLRISLRIC
101: GTVVESLPMA RCAPKCEKTV QALLCRNLNV KSATLTNATS SRRIRFQDDL VTKFYTLVGK QFAYSCISKA ERVEFIRESL VVLRMVRGGV FS

Arabidopsis Description

ORF25hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding [Source:TAIR;Acc:ATMG00640]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.