Factsheet for Solyc06g005020.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g042990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52300.1	Solyc06g042990.1.1	ATMG00640.1	12681508

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059780	Potato	cytosol	63.64	54.17
GSMUA_Achr10P...	Banana	cytosol	52.45	51.72
Solyc11g072450.1.1	Tomato	plastid	60.14	51.19
Bra006918.1-P	Field mustard	cytosol	58.74	50.0
CDX73643	Canola	cytosol	58.74	50.0
CDX78082	Canola	cytosol	58.74	50.0
AT3G52300.1	Thale cress	cytosol, mitochondrion	58.74	50.0
Bra012809.1-P	Field mustard	cytosol	58.04	49.4
CDX90607	Canola	cytosol	58.04	49.4
CDX95329	Canola	cytosol	58.04	49.4
CDY23204	Canola	cytosol	58.04	49.4
KRG91849	Soybean	endoplasmic reticulum	58.04	49.4
VIT_13s0019g03860.t01	Wine grape	cytosol	57.34	48.81
CDY29076	Canola	cytosol	57.34	48.81
Bra033442.1-P	Field mustard	cytosol	57.34	48.81
KRH34917	Soybean	endoplasmic reticulum, mitochondrion	55.94	47.62
HORVU2Hr1G072660.2	Barley	cytosol, plasma membrane, plastid	53.85	46.11
TraesCS2A01G293700.1	Wheat	cytosol, golgi, plastid, unclear	53.15	45.51
EES15140	Sorghum	cytosol	53.15	44.97
TraesCS2B01G310000.1	Wheat	cytosol	52.45	44.91
TraesCS2D01G291300.1	Wheat	cytosol, plastid	52.45	44.91
Os08t0478200-01	Rice	mitochondrion, plastid	51.75	43.79
GSMUA_Achr7P09760_001	Banana	cytosol	51.75	43.79
KXG35044	Sorghum	cytosol	51.75	43.53
Zm00001d031825_P001	Maize	cytosol	46.85	37.64
HORVU2Hr1G072650.1	Barley	cytosol	53.85	35.16
Solyc06g005010.1.1	Tomato	plastid	8.39	13.95

Protein Annotations

MapMan:2.4.6.1.4	InterPro:ATP_synth_F0_dsu_mt	InterPro:ATP_synth_F0_dsu_sf_mt	ncoils:Coil	GO:GO:0000274	GO:GO:0000276
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015078
GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0046933	GO:GO:0099132	InterPro:IPR036228
UniProt:K4C2Y7	PFAM:PD968187	PANTHER:PTHR12700	SUPFAM:SSF161065	EnsemblPlantsGene:Solyc06g005020.1	EnsemblPlants:Solyc06g005020.1.1
UniParc:UPI000276592C	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:13310..15016

Molecular Weight (calculated)

16783.8 Da

IEP (calculated)

4.606

GRAVY (calculated)

-0.764

Length

143 amino acids

Sequence
(BLAST)

001: MDNTWSSEPE PINWGYYRKG IGSRLVDMYK ERPTTSSGPG LYDFSGVGFR DIVFYVGELC IEIPKFVDMV TPQYKPKFDA LLVELKEAEQ KSLKESERLE
101: KEVADVQELK KKLSTMTAEE YFEKHPELKK KFDDEIQNDY WGY

Best Arabidopsis Sequence Match ( AT3G52300.1 )
(BLAST)

001: MSGAGKKIAD VAFKASRTID WDGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDYYRKG IGAGIVDKYK EAYDSIEIPK YVDKVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIAD VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDNWGY

Arabidopsis Description

ATPQATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FT52]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.