Factsheet for Os08t0478200-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

nucleus: 15659629

mitochondrion: 16429260
plastid: 17189339
mitochondrion: 19010998
plastid: 21433289
mitochondrion: 23027867
plasma membrane: 27800704
plastid: 27992503

gfp PMID: 15659629 doi

K Moriguchi, T Suzuki, Y Ito, Y Yamazaki, Y Niwa, N Kurata

Plant Genetics Laboratory, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 16429260 doi

KA Howell, AH Millar, J Whelan

ARC Centre of Excellence in Plant Energy Biology, CMS Building M310, University of Western Australia, 35 Stirling Hwy, Perth, WA 6009, Australia.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
BAC19854
BAC19860
BAC19885
Os01t0218200-00
Os01t0899275-00
Os01t0899350-00
Os05t0210600-01
Os05t0587300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52300.1	Os01t0218200-00	AT2G42580.1	19000166
AT3G52300.1	Os05t0210600-01	AT2G42580.1	19000166
AT3G52300.1	Os05t0587300-01	AT2G42580.1	19000166
AT3G52300.1	BAC19860	ATMG00480.1	12681508
AT3G52300.1	BAC19854	ATMG00640.1	12681508
AT3G52300.1	BAC19885	ATMG01080.1	12681508
AT3G52300.1	Os01t0899275-00	ATMG01080.1	12681508
AT3G52300.1	Os01t0899350-00	ATMG01080.1	12681508

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G072660.2	Barley	cytosol, plasma membrane, plastid	89.35	90.42
EES15140	Sorghum	cytosol	89.94	89.94
TraesCS2D01G291300.1	Wheat	cytosol, plastid	86.98	88.02
TraesCS2B01G310000.1	Wheat	cytosol	86.98	88.02
TraesCS2A01G293700.1	Wheat	cytosol, golgi, plastid, unclear	86.39	87.43
GSMUA_Achr10P...	Banana	cytosol	73.96	86.21
GSMUA_Achr7P09760_001	Banana	cytosol	84.62	84.62
PGSC0003DMT400070407	Potato	cytosol	80.47	80.95
Solyc11g072450.1.1	Tomato	plastid	79.88	80.36
PGSC0003DMT400059780	Potato	cytosol	78.11	78.57
VIT_13s0019g03860.t01	Wine grape	cytosol	77.51	77.98
KRG91849	Soybean	endoplasmic reticulum	77.51	77.98
Zm00001d031825_P001	Maize	cytosol	81.66	77.53
Bra006918.1-P	Field mustard	cytosol	76.33	76.79
CDY23204	Canola	cytosol	76.33	76.79
CDX95329	Canola	cytosol	76.33	76.79
CDX90607	Canola	cytosol	76.33	76.79
CDX78082	Canola	cytosol	76.33	76.79
CDX73643	Canola	cytosol	76.33	76.79
Bra012809.1-P	Field mustard	cytosol	76.33	76.79
AT3G52300.1	Thale cress	cytosol, mitochondrion	76.33	76.79
CDY29076	Canola	cytosol	75.74	76.19
KRH34917	Soybean	endoplasmic reticulum, mitochondrion	75.15	75.6
Bra033442.1-P	Field mustard	cytosol	75.15	75.6
HORVU2Hr1G072650.1	Barley	cytosol	89.35	68.95
Solyc06g005010.1.1	Tomato	plastid	28.99	56.98
Solyc06g005020.1.1	Tomato	plastid	43.79	51.75

Protein Annotations

Gene3D:1.20.58.880	MapMan:2.4.6.1.4	EntrezGene:4345839	EMBL:AB110175	EMBL:AK068050	InterPro:ATP_synth_F0_dsu_mt
InterPro:ATP_synth_F0_dsu_sf_mt	ProteinID:BAD09007.1	ProteinID:BAF23964.1	ProteinID:BAT05900.1	ncoils:Coil	ProteinID:EEE68870.1
GO:GO:0000274	GO:GO:0000276	GO:GO:0003674	GO:GO:0003735	GO:GO:0003824	GO:GO:0005198
GO:GO:0005215	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0005753
GO:GO:0005773	GO:GO:0005774	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006810
GO:GO:0006811	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009651
GO:GO:0009987	GO:GO:0015078	GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0022626
GO:GO:0042788	GO:GO:0046933	GO:GO:0099132	InterPro:IPR036228	EnsemblPlantsGene:Os08g0478200	EnsemblPlants:Os08t0478200-01
PFAM:PD968187	PFAM:PF05873	PIRSF:PIRSF005514	PANTHER:PTHR12700	UniProt:Q7XXS0	SUPFAM:SSF161065
UniParc:UPI00001AB0C0	RefSeq:XP_015650637.1	SEG:seg	:	:	:

Description

mitochondrial ATP synthase d2Similar to ATP synthase D chain, mitochondrial (EC 3.6.3.14). (Os08t0478200-01)

Coordinates

chr8:-:23579296..23582145

Molecular Weight (calculated)

19726.3 Da

IEP (calculated)

4.917

GRAVY (calculated)

-0.902

Length

169 amino acids

Sequence
(BLAST)

001: MSGNGVKKVA EVAAKAGKAI DWEGMAKMLV SDEARKEFNT LRRTFEDVNH QLQTKFSQEP QPIDWEYYRK GIGSKVVDMY KEAYESIEIP KYVDTVTPQY
101: KPKFDALLVE LKEAEKESLK ESERIEKELA ELQEMKKNIS TMTADEYFAK HPEVKQKFDD EIRNDNWGY

Best Arabidopsis Sequence Match ( AT3G52300.1 )
(BLAST)

001: MSGAGKKIAD VAFKASRTID WDGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDYYRKG IGAGIVDKYK EAYDSIEIPK YVDKVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIAD VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDNWGY

Arabidopsis Description

ATPQATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FT52]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.