Subcellular Localization
min:
: max
Winner_takes_all: golgi, unclear, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22160430
golgi: 25769308 unclear: 25769308 |
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G291300.1 | Wheat | cytosol, plastid | 99.4 | 99.4 |
| TraesCS2B01G310000.1 | Wheat | cytosol | 99.4 | 99.4 |
| HORVU2Hr1G072660.2 | Barley | cytosol, plasma membrane, plastid | 93.41 | 93.41 |
| KXG35044 | Sorghum | cytosol | 92.22 | 90.59 |
| Os08t0478200-01 | Rice | mitochondrion, plastid | 87.43 | 86.39 |
| GSMUA_Achr10P... | Banana | cytosol | 73.05 | 84.14 |
| GSMUA_Achr7P09760_001 | Banana | cytosol | 81.44 | 80.47 |
| Solyc11g072450.1.1 | Tomato | plastid | 80.84 | 80.36 |
| PGSC0003DMT400070407 | Potato | cytosol | 80.24 | 79.76 |
| KRG91849 | Soybean | endoplasmic reticulum | 79.64 | 79.17 |
| PGSC0003DMT400059780 | Potato | cytosol | 79.04 | 78.57 |
| VIT_13s0019g03860.t01 | Wine grape | cytosol | 78.44 | 77.98 |
| CDX95329 | Canola | cytosol | 78.44 | 77.98 |
| Bra006918.1-P | Field mustard | cytosol | 77.84 | 77.38 |
| KRH34917 | Soybean | endoplasmic reticulum, mitochondrion | 77.84 | 77.38 |
| CDY23204 | Canola | cytosol | 77.84 | 77.38 |
| CDX90607 | Canola | cytosol | 77.84 | 77.38 |
| CDX78082 | Canola | cytosol | 77.84 | 77.38 |
| CDX73643 | Canola | cytosol | 77.84 | 77.38 |
| Bra012809.1-P | Field mustard | cytosol | 77.84 | 77.38 |
| AT3G52300.1 | Thale cress | cytosol, mitochondrion | 77.84 | 77.38 |
| CDY29076 | Canola | cytosol | 77.25 | 76.79 |
| Bra033442.1-P | Field mustard | cytosol | 76.65 | 76.19 |
| Zm00001d031825_P001 | Maize | cytosol | 79.04 | 74.16 |
| HORVU2Hr1G072650.1 | Barley | cytosol | 93.41 | 71.23 |
| Solyc06g005010.1.1 | Tomato | plastid | 29.94 | 58.14 |
| Solyc06g005020.1.1 | Tomato | plastid | 45.51 | 53.15 |
Protein Annotations
| Gene3D:1.20.58.880 | MapMan:2.4.6.1.4 | InterPro:ATP_synth_F0_dsu_mt | InterPro:ATP_synth_F0_dsu_sf_mt | ncoils:Coil | GO:GO:0000276 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005507 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005753 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0006139 | GO:GO:0006810 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009628 |
| GO:GO:0009651 | GO:GO:0009987 | GO:GO:0015078 | GO:GO:0015986 | GO:GO:0016020 | GO:GO:0022626 |
| GO:GO:0042788 | InterPro:IPR036228 | PFAM:PD968187 | PFAM:PF05873 | PIRSF:PIRSF005514 | PANTHER:PTHR12700 |
| SUPFAM:SSF161065 | EnsemblPlantsGene:TraesCS2A01G293700 | EnsemblPlants:TraesCS2A01G293700.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2A:+:504709106..504710944
Molecular Weight (calculated)
19531.3 Da
IEP (calculated)
5.929
GRAVY (calculated)
-0.851
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGVKKVTDV AAKAGKAIDW DGLAKMLVSD EARKEFANLR RTFEDVNHQL QTKFSQEPKP IDWEYYKKGI GSKVVDMYKE AYDSIEIPKY VDTVTPEYKP
101: KFDALLIEMK EAEKTSLKES ERIEKEIAEL KELKKKISTM TADEYFAKHP ELKKKFDDEI RNDYWGY
101: KFDALLIEMK EAEKTSLKES ERIEKEIAEL KELKKKISTM TADEYFAKHP ELKKKFDDEI RNDYWGY
001: MSGAGKKIAD VAFKASRTID WDGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDYYRKG IGAGIVDKYK EAYDSIEIPK YVDKVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIAD VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDNWGY
101: PKFDALLVEL KEAEQKSLKE SERLEKEIAD VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDNWGY
Arabidopsis Description
ATPQATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FT52]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.