Factsheet for TraesCS5A01G020100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G245500.1	Wheat	extracellular	99.36	99.36
TraesCS5A01G430400.1	Wheat	extracellular	99.36	99.36
TraesCS7D01G464300.1	Wheat	extracellular, vacuole	98.72	98.72
TraesCS1A01G140100.1	Wheat	extracellular, golgi	98.72	98.72
TraesCS2B01G265400.1	Wheat	extracellular, golgi	98.08	98.71
TraesCS3A01G142300.1	Wheat	extracellular, plasma membrane	98.08	98.08
TraesCS3D01G520800.1	Wheat	extracellular, vacuole	96.15	96.15
GRMZM5G816772_P01	Maize	extracellular	94.23	96.08
BAC19860	Rice	plasma membrane	94.23	94.84
TraesCS7A01G164600.1	Wheat	extracellular	87.18	87.18
HORVU6Hr1G039040.1	Barley	cytosol	64.74	80.16
VIT_01s0146g00390.t01	Wine grape	extracellular	75.64	74.21
ATMG00480.1	Thale cress	extracellular	75.0	74.05
AT2G07707.1	Thale cress	extracellular	75.0	74.05
VIT_00s0246g00220.t01	Wine grape	extracellular	75.0	73.58
PGSC0003DMT400029511	Potato	extracellular	72.44	72.44
GSMUA_AchrUn_...	Banana	extracellular	71.79	69.57
PGSC0003DMT400034190	Potato	cytosol	24.36	67.86
KRH62975	Soybean	endoplasmic reticulum, mitochondrion	42.31	52.38
CDY45297	Canola	extracellular	28.85	46.39
CDY65732	Canola	endoplasmic reticulum, extracellular, golgi	44.87	16.13
ATMG00500.1	Thale cress	mitochondrion	11.54	12.77
AT2G07708.1	Thale cress	mitochondrion	11.54	12.77

Protein Annotations

EnsemblPlants:TraesCS5A01G020100.1	EnsemblPlantsGene:TraesCS5A01G020100	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0016020	GO:GO:0016021	InterPro:YMF19	InterPro:YMF19-like_N	KEGG:00190+3.6.3.14
KEGG:00195+3.6.3.14	PANTHER:PTHR36816	PFAM:PF02326	PFAM:PF06449	SEG:seg	TMHMM:TMhelix
MapMan:2.4.6.1.6	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:16574345..16574815

Molecular Weight (calculated)

17960.9 Da

IEP (calculated)

10.216

GRAVY (calculated)

-0.159

Length

156 amino acids

Sequence
(BLAST)

001: MPQLDKLTYF SQFFWLCLLL FTFYILLFNN NNGILGISRI LKLRNQLLSH RGGEIRSKDP KNLEDISRKG FSTGLSYMYS SLSEVSQWCK TVDYLGKRRK
101: ITLISDFGEI SGSRGMERQI LYLISKSSYN TSSSRITCWK NIMLTHVPHG QGSIIS

Best Arabidopsis Sequence Match ( ATMG00480.1 )
(BLAST)

001: MPQLDKFTYF SQFFWLCLFF FTFYIFICND GDGVLGISRI LKLRNQLLSH RGKTIRSKDP NSLEDLLRKG FSTGVSYMYA SLFEVSQWCK AVDLLGKRRK
101: ITLISCFGEI SGSRGMERNI LYNISKSSPS NTGRWITCRN CRNDIMLIHV VHGQGSIK

Arabidopsis Description

YMF19Atp8 [Source:UniProtKB/TrEMBL;Acc:G1C2R4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.