Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G020100.1 | Wheat | golgi | 98.72 | 98.72 |
| TraesCSU01G245500.1 | Wheat | extracellular | 98.08 | 98.08 |
| TraesCS5A01G430400.1 | Wheat | extracellular | 98.08 | 98.08 |
| TraesCS7D01G464300.1 | Wheat | extracellular, vacuole | 97.44 | 97.44 |
| TraesCS3A01G142300.1 | Wheat | extracellular, plasma membrane | 96.79 | 96.79 |
| TraesCS3D01G520800.1 | Wheat | extracellular, vacuole | 94.87 | 94.87 |
| GRMZM5G816772_P01 | Maize | extracellular | 92.95 | 94.77 |
| BAC19860 | Rice | plasma membrane | 92.95 | 93.55 |
| TraesCS7A01G164600.1 | Wheat | extracellular | 85.9 | 85.9 |
| HORVU6Hr1G039040.1 | Barley | cytosol | 64.1 | 79.37 |
| VIT_01s0146g00390.t01 | Wine grape | extracellular | 74.36 | 72.96 |
| ATMG00480.1 | Thale cress | extracellular | 73.72 | 72.78 |
| AT2G07707.1 | Thale cress | extracellular | 73.72 | 72.78 |
| VIT_00s0246g00220.t01 | Wine grape | extracellular | 73.72 | 72.33 |
| PGSC0003DMT400029511 | Potato | extracellular | 71.15 | 71.15 |
| GSMUA_AchrUn_... | Banana | extracellular | 70.51 | 68.32 |
| PGSC0003DMT400034190 | Potato | cytosol | 23.72 | 66.07 |
| KRH62975 | Soybean | endoplasmic reticulum, mitochondrion | 42.31 | 52.38 |
| CDY45297 | Canola | extracellular | 28.21 | 45.36 |
| CDY65732 | Canola | endoplasmic reticulum, extracellular, golgi | 44.23 | 15.9 |
| ATMG00500.1 | Thale cress | mitochondrion | 11.54 | 12.77 |
| AT2G07708.1 | Thale cress | mitochondrion | 11.54 | 12.77 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G140100.1 | EnsemblPlantsGene:TraesCS1A01G140100 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0016020 | GO:GO:0016021 | InterPro:YMF19 | InterPro:YMF19-like_N | KEGG:00190+3.6.3.14 |
| KEGG:00195+3.6.3.14 | PANTHER:PTHR36816 | PFAM:PF02326 | PFAM:PF06449 | SEG:seg | TMHMM:TMhelix |
| MapMan:2.4.6.1.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:238106169..238106639
Molecular Weight (calculated)
17942.9 Da
IEP (calculated)
10.308
GRAVY (calculated)
-0.145
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKLDKLTYF SQFFWLCLLL FTFYILLFNN NNGILGISRI LKLRNQLLSH RGGEIRSKDP KNLEDISRKG FSTGLSYMYS SLSEVSQWCK TVDYLGKRRK
101: ITLISDFGEI SGSRGMERQI LYLISKSSYN TSSSRITCWK NIILTHVPHG QGSIIS
101: ITLISDFGEI SGSRGMERQI LYLISKSSYN TSSSRITCWK NIILTHVPHG QGSIIS
001: MPQLDKFTYF SQFFWLCLFF FTFYIFICND GDGVLGISRI LKLRNQLLSH RGKTIRSKDP NSLEDLLRKG FSTGVSYMYA SLFEVSQWCK AVDLLGKRRK
101: ITLISCFGEI SGSRGMERNI LYNISKSSPS NTGRWITCRN CRNDIMLIHV VHGQGSIK
101: ITLISCFGEI SGSRGMERNI LYNISKSSPS NTGRWITCRN CRNDIMLIHV VHGQGSIK
Arabidopsis Description
YMF19Atp8 [Source:UniProtKB/TrEMBL;Acc:G1C2R4]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.