Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400034190 | Potato | cytosol | 35.9 | 100.0 |
| VIT_01s0146g00390.t01 | Wine grape | extracellular | 91.03 | 89.31 |
| VIT_00s0246g00220.t01 | Wine grape | extracellular | 89.74 | 88.05 |
| ATMG00480.1 | Thale cress | extracellular | 84.62 | 83.54 |
| AT2G07707.1 | Thale cress | extracellular | 84.62 | 83.54 |
| GRMZM5G816772_P01 | Maize | extracellular | 74.36 | 75.82 |
| BAC19860 | Rice | plasma membrane | 73.72 | 74.19 |
| TraesCS2B01G265400.1 | Wheat | extracellular, golgi | 72.44 | 72.9 |
| TraesCS5A01G020100.1 | Wheat | golgi | 72.44 | 72.44 |
| TraesCSU01G245500.1 | Wheat | extracellular | 71.79 | 71.79 |
| TraesCS5A01G430400.1 | Wheat | extracellular | 71.79 | 71.79 |
| GSMUA_AchrUn_... | Banana | extracellular | 73.72 | 71.43 |
| TraesCS1A01G140100.1 | Wheat | extracellular, golgi | 71.15 | 71.15 |
| TraesCS7D01G464300.1 | Wheat | extracellular, vacuole | 71.15 | 71.15 |
| TraesCS2D01G230200.1 | Wheat | extracellular, golgi | 71.15 | 71.15 |
| TraesCS3A01G142300.1 | Wheat | extracellular, plasma membrane | 70.51 | 70.51 |
| BAV58133 | Barley | endoplasmic reticulum, extracellular | 70.51 | 70.51 |
| TraesCS3B01G430700.1 | Wheat | endoplasmic reticulum, extracellular | 69.87 | 70.32 |
| TraesCS7B01G051100.1 | Wheat | endoplasmic reticulum, extracellular | 69.87 | 69.87 |
| TraesCS4B01G146500.1 | Wheat | extracellular | 68.59 | 68.59 |
| TraesCS6D01G168600.1 | Wheat | extracellular, plasma membrane | 68.59 | 68.59 |
| HORVU7Hr1G089600.1 | Barley | extracellular | 68.59 | 68.59 |
| TraesCS3D01G520800.1 | Wheat | extracellular, vacuole | 68.59 | 68.59 |
| TraesCS3D01G410500.1 | Wheat | extracellular, plasma membrane | 68.59 | 68.59 |
| HORVU4Hr1G059430.1 | Barley | extracellular, golgi | 66.03 | 66.03 |
| KRH62975 | Soybean | endoplasmic reticulum, mitochondrion | 53.21 | 65.87 |
| TraesCS7A01G164600.1 | Wheat | extracellular | 62.18 | 62.18 |
| HORVU6Hr1G039040.1 | Barley | cytosol | 46.15 | 57.14 |
| CDY45297 | Canola | extracellular | 30.77 | 49.48 |
| HORVU2Hr1G034000.1 | Barley | cytosol | 26.28 | 32.28 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400029511 | EnsemblPlantsGene:PGSC0003DMG400011350 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0016020 | GO:GO:0016021 | InterPro:YMF19 | InterPro:YMF19-like_N | KEGG:00190+3.6.3.14 |
| KEGG:00195+3.6.3.14 | PANTHER:PTHR36816 | PFAM:PF02326 | PFAM:PF06449 | PGSC:PGSC0003DMG400011350 | ProteinID:AUS83393.1 |
| TMHMM:TMhelix | UniParc:UPI00029502AE | UniProt:M1ASX8 | MapMan:2.4.6.1.6 | : | : |
Description
OrfB protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011350]
Coordinates
chr1:+:57393258..57395487
Molecular Weight (calculated)
17951.8 Da
IEP (calculated)
9.005
GRAVY (calculated)
-0.040
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MPQLDKFTYF TQFFWSCLFL FTFYIPICND GDGVLGISRI LKLRNQLVSH RENKIRSNDP NSLEDILRKG FSTGVSYMYS SLFEVSQWCN AVDFLGKRRK
101: MTLISCFGEI SGSRGMERNI FYLISKSVHS NPGWVITCRN DIMLIHVPHG QGSIGF
101: MTLISCFGEI SGSRGMERNI FYLISKSVHS NPGWVITCRN DIMLIHVPHG QGSIGF
001: MPQLDKFTYF SQFFWLCLFF FTFYIFICND GDGVLGISRI LKLRNQLLSH RGKTIRSKDP NSLEDLLRKG FSTGVSYMYA SLFEVSQWCK AVDLLGKRRK
101: ITLISCFGEI SGSRGMERNI LYNISKSSPS NTGRWITCRN CRNDIMLIHV VHGQGSIK
101: ITLISCFGEI SGSRGMERNI LYNISKSSPS NTGRWITCRN CRNDIMLIHV VHGQGSIK
Arabidopsis Description
YMF19Atp8 [Source:UniProtKB/TrEMBL;Acc:G1C2R4]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.