Factsheet for PGSC0003DMT400034190

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 2
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 3
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45297	Canola	extracellular	69.64	40.21
PGSC0003DMT400029511	Potato	extracellular	100.0	35.9
VIT_01s0146g00390.t01	Wine grape	extracellular	83.93	29.56
VIT_00s0246g00220.t01	Wine grape	extracellular	82.14	28.93
ATMG00480.1	Thale cress	extracellular	80.36	28.48
AT2G07707.1	Thale cress	extracellular	80.36	28.48
HORVU6Hr1G039040.1	Barley	cytosol	60.71	26.98
TraesCS2B01G265400.1	Wheat	extracellular, golgi	69.64	25.16
GRMZM5G816772_P01	Maize	extracellular	67.86	24.84
BAC19860	Rice	plasma membrane	67.86	24.52
TraesCSU01G245500.1	Wheat	extracellular	67.86	24.36
TraesCS7D01G464300.1	Wheat	extracellular, vacuole	67.86	24.36
TraesCS7A01G164600.1	Wheat	extracellular	67.86	24.36
TraesCS5A01G430400.1	Wheat	extracellular	67.86	24.36
TraesCS5A01G020100.1	Wheat	golgi	67.86	24.36
TraesCS2D01G230200.1	Wheat	extracellular, golgi	67.86	24.36
TraesCS3B01G430700.1	Wheat	endoplasmic reticulum, extracellular	66.07	23.87
TraesCS3A01G142300.1	Wheat	extracellular, plasma membrane	66.07	23.72
TraesCS3D01G410500.1	Wheat	extracellular, plasma membrane	66.07	23.72
TraesCS1A01G140100.1	Wheat	extracellular, golgi	66.07	23.72
TraesCS7B01G051100.1	Wheat	endoplasmic reticulum, extracellular	66.07	23.72
GSMUA_AchrUn_...	Banana	extracellular	67.86	23.6
TraesCS4B01G146500.1	Wheat	extracellular	64.29	23.08
BAV58133	Barley	endoplasmic reticulum, extracellular	64.29	23.08
TraesCS6D01G168600.1	Wheat	extracellular, plasma membrane	64.29	23.08
HORVU7Hr1G089600.1	Barley	extracellular	62.5	22.44
TraesCS3D01G520800.1	Wheat	extracellular, vacuole	60.71	21.79
HORVU4Hr1G059430.1	Barley	extracellular, golgi	57.14	20.51
HORVU2Hr1G034000.1	Barley	cytosol	10.71	4.72
KRH62975	Soybean	endoplasmic reticulum, mitochondrion	3.57	1.59

Protein Annotations

EnsemblPlants:PGSC0003DMT400034190	EnsemblPlantsGene:PGSC0003DMG400013141	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0016020	GO:GO:0016021	InterPro:YMF19	KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14
PANTHER:PTHR36816	PFAM:PF06449	PGSC:PGSC0003DMG400013141	UniParc:UPI000295B4EC	UniProt:M1B095	MapMan:35.1

Description

OrfB protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013141]

Coordinates

chr11:+:32794855..32795225

Molecular Weight (calculated)

6208.6 Da

IEP (calculated)

8.254

GRAVY (calculated)

0.221

Length

56 amino acids

Sequence
(BLAST)

1: MTLISCFGEI SGSRGMERNI FYLISKSVHS NPGWVITCRN DIMLIHVPHG QGSIGF

Best Arabidopsis Sequence Match ( ATMG00480.1 )
(BLAST)

001: MPQLDKFTYF SQFFWLCLFF FTFYIFICND GDGVLGISRI LKLRNQLLSH RGKTIRSKDP NSLEDLLRKG FSTGVSYMYA SLFEVSQWCK AVDLLGKRRK
101: ITLISCFGEI SGSRGMERNI LYNISKSSPS NTGRWITCRN CRNDIMLIHV VHGQGSIK

Arabidopsis Description

YMF19Atp8 [Source:UniProtKB/TrEMBL;Acc:G1C2R4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.