CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

mitochondrion: 23027867
plastid: 27992503
plasma membrane: 28056797

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GRMZM5G816772_P01	Maize	extracellular	94.19	95.42
TraesCS5A01G020100.1	Wheat	golgi	94.84	94.23
TraesCS2B01G265400.1	Wheat	extracellular, golgi	94.19	94.19
TraesCSU01G245500.1	Wheat	extracellular	94.19	93.59
TraesCS5A01G430400.1	Wheat	extracellular	94.19	93.59
TraesCS7D01G464300.1	Wheat	extracellular, vacuole	93.55	92.95
TraesCS2D01G230200.1	Wheat	extracellular, golgi	93.55	92.95
TraesCS1A01G140100.1	Wheat	extracellular, golgi	93.55	92.95
TraesCS3A01G142300.1	Wheat	extracellular, plasma membrane	92.9	92.31
BAV58133	Barley	endoplasmic reticulum, extracellular	92.9	92.31
TraesCS3B01G430700.1	Wheat	endoplasmic reticulum, extracellular	91.61	91.61
TraesCS7B01G051100.1	Wheat	endoplasmic reticulum, extracellular	91.61	91.03
HORVU7Hr1G089600.1	Barley	extracellular	90.97	90.38
TraesCS3D01G520800.1	Wheat	extracellular, vacuole	90.97	90.38
TraesCS4B01G146500.1	Wheat	extracellular	90.32	89.74
TraesCS3D01G410500.1	Wheat	extracellular, plasma membrane	90.32	89.74
TraesCS6D01G168600.1	Wheat	extracellular, plasma membrane	89.68	89.1
HORVU4Hr1G059430.1	Barley	extracellular, golgi	85.81	85.26
TraesCS7A01G164600.1	Wheat	extracellular	83.23	82.69
HORVU6Hr1G039040.1	Barley	cytosol	63.23	77.78
VIT_01s0146g00390.t01	Wine grape	extracellular	76.77	74.84
VIT_00s0246g00220.t01	Wine grape	extracellular	76.13	74.21
ATMG00480.1	Thale cress	extracellular	75.48	74.05
AT2G07707.1	Thale cress	extracellular	75.48	74.05
PGSC0003DMT400029511	Potato	extracellular	74.19	73.72
GSMUA_AchrUn_...	Banana	extracellular	73.55	70.81
PGSC0003DMT400034190	Potato	cytosol	24.52	67.86
KRH62975	Soybean	endoplasmic reticulum, mitochondrion	44.52	54.76
CDY45297	Canola	extracellular	29.68	47.42
HORVU2Hr1G034000.1	Barley	cytosol	33.55	40.94
CDY65732	Canola	endoplasmic reticulum, extracellular, golgi	43.87	15.67
ATMG00500.1	Thale cress	mitochondrion	12.26	13.48
AT2G07708.1	Thale cress	mitochondrion	12.26	13.48

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:2.4.6.1.6	EntrezGene:6450152	ProteinID:AAZ99333.1	ProteinID:AAZ99386.1
EnsemblPlants:BAC19860	EnsemblPlantsGene:BAC19860	ProteinID:BAC19860	ProteinID:BAC19860.2	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016820	PFAM:PF02326	PFAM:PF06449
PANTHER:PTHR36816	MetaCyc:PWY-7219	UniProt:Q2F945	UniProt:Q8HCQ9	TMHMM:TMhelix	UniParc:UPI000009043E
UniParc:UPI000009ACB2	InterPro:YMF19	InterPro:YMF19-like_N	RefSeq:YP_002000556.1	SEG:seg	:

Description

orfBORFB protein

Coordinates

chrMt:+:53424..53891

Molecular Weight (calculated)

17990.1 Da

IEP (calculated)

10.493

GRAVY (calculated)

-0.157

Length

155 amino acids

Sequence
(BLAST)

001: MPQLDKLTYF SQFFWLCLFL FSFYILLLNN NNGILGISRI LKLRNQLLSH RGNKIRFKDP KNLEDISRKG FSTGLSYMYS SLSEVSQWCK TVDYLGKRRK
101: ITLISDFGEI SGSRGMERQI LYLISKSSYN TSSSRITCWK KIMLTHVPHG QGSII

Best Arabidopsis Sequence Match ( ATMG00480.1 )
(BLAST)

001: MPQLDKFTYF SQFFWLCLFF FTFYIFICND GDGVLGISRI LKLRNQLLSH RGKTIRSKDP NSLEDLLRKG FSTGVSYMYA SLFEVSQWCK AVDLLGKRRK
101: ITLISCFGEI SGSRGMERNI LYNISKSSPS NTGRWITCRN CRNDIMLIHV VHGQGSIK

Arabidopsis Description

YMF19Atp8 [Source:UniProtKB/TrEMBL;Acc:G1C2R4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.