CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, extracellular

Predictor Summary:

nucleus 1
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, golgi
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0246g00220.t01	Wine grape	extracellular	18.2	49.69
VIT_01s0146g00390.t01	Wine grape	extracellular	17.97	49.06
GRMZM5G816772_P01	Maize	extracellular	16.13	45.75
TraesCS7D01G464300.1	Wheat	extracellular, vacuole	16.36	45.51
TraesCS3B01G430700.1	Wheat	endoplasmic reticulum, extracellular	16.13	45.16
TraesCS2D01G230200.1	Wheat	extracellular, golgi	16.13	44.87
TraesCSU01G245500.1	Wheat	extracellular	16.13	44.87
TraesCS5A01G020100.1	Wheat	golgi	16.13	44.87
TraesCS4B01G146500.1	Wheat	extracellular	16.13	44.87
TraesCS2B01G265400.1	Wheat	extracellular, golgi	15.9	44.52
TraesCS1A01G140100.1	Wheat	extracellular, golgi	15.9	44.23
TraesCS3A01G142300.1	Wheat	extracellular, plasma membrane	15.9	44.23
BAV58133	Barley	endoplasmic reticulum, extracellular	15.9	44.23
TraesCS5A01G430400.1	Wheat	extracellular	15.9	44.23
TraesCS6D01G168600.1	Wheat	extracellular, plasma membrane	15.9	44.23
BAC19860	Rice	plasma membrane	15.67	43.87
HORVU7Hr1G089600.1	Barley	extracellular	15.67	43.59
TraesCS3D01G520800.1	Wheat	extracellular, vacuole	15.67	43.59
TraesCS3D01G410500.1	Wheat	extracellular, plasma membrane	15.44	42.95
TraesCS7B01G051100.1	Wheat	endoplasmic reticulum, extracellular	15.44	42.95
GSMUA_AchrUn_...	Banana	extracellular	15.44	41.61
HORVU4Hr1G059430.1	Barley	extracellular, golgi	14.75	41.03
KRH62975	Soybean	endoplasmic reticulum, mitochondrion	11.75	40.48
ATMG00500.1	Thale cress	mitochondrion	12.67	39.01
AT2G07708.1	Thale cress	mitochondrion	12.67	39.01
TraesCS7A01G164600.1	Wheat	extracellular	13.13	36.54
HORVU6Hr1G039040.1	Barley	cytosol	8.06	27.78
HORVU2Hr1G034000.1	Barley	cytosol	7.14	24.41
CDY45297	Canola	extracellular	3.0	13.4

Protein Annotations

MapMan:2.4.6.1.6	GO:A0A078JK64	UniProt:A0A078JK64	EnsemblPlants:CDY65732	ProteinID:CDY65732	ProteinID:CDY65732.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006754
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015992	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0031966	GO:GO:0045263
EnsemblPlantsGene:GSBRNA2T00048123001	PFAM:PF02326	PANTHER:PTHR36816	TMHMM:TMhelix	UniParc:UPI0004EF1C62	InterPro:YMF19-like_N
SEG:seg	:	:	:	:	:

Description

BnaCnng48510DBnaCnng48510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JK64]

Coordinates

chrLK034926:+:12732..16033

Molecular Weight (calculated)

48318.7 Da

IEP (calculated)

10.841

GRAVY (calculated)

-0.429

Length

434 amino acids

Sequence
(BLAST)

001: MPQLDKFTYF SQFFWLCLFF FTFYIFICND GDGVLGISRI LKLRNQLLSH RGKTIQSKDP NSLEDLLRKG FSTGIPLVGK ALYCALLKVP IAGARILAFA
101: IRGLPGAEAH SEPREPSSLR HKRFMKRLMV MRIHAHSNKS SLRIGLSTVL GAPLHPHSRL PPSEVLPIQL EVFMDVPIFI RTYYRPANMD DSFRYGIIFR
201: MYDLAVQLQW GNVMKLLPVT KTQVETKKKA LNLNLVGRGP SKRKGRGTRV EGSSKEMHFW YKCIGNERRS GGTCGTTYWI TPVRHEAADA ESAPMPLAMP
301: CLVPRHGGGS VAGHEHRAKG RSHSTERRGL PVKGASAYPG PNRRQRRGAL ATRLKGEERN SHTASGEDGT TGKDRLAKTP QARSVVGLRR VSIGGKGSRT
401: VEEPGEAGGT EKLIEYKTYL QALPYSDRGA NDPR

Best Arabidopsis Sequence Match ( ATMG00480.1 )
(BLAST)

001: MPQLDKFTYF SQFFWLCLFF FTFYIFICND GDGVLGISRI LKLRNQLLSH RGKTIRSKDP NSLEDLLRKG FSTGVSYMYA SLFEVSQWCK AVDLLGKRRK
101: ITLISCFGEI SGSRGMERNI LYNISKSSPS NTGRWITCRN CRNDIMLIHV VHGQGSIK

Arabidopsis Description

YMF19Atp8 [Source:UniProtKB/TrEMBL;Acc:G1C2R4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.