CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

plastid 1
mitochondrion 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029511	Potato	extracellular	65.87	53.21
VIT_01s0146g00390.t01	Wine grape	extracellular	65.08	51.57
VIT_00s0246g00220.t01	Wine grape	extracellular	64.29	50.94
ATMG00480.1	Thale cress	extracellular	58.73	46.84
AT2G07707.1	Thale cress	extracellular	58.73	46.84
BAC19860	Rice	plasma membrane	54.76	44.52
GRMZM5G816772_P01	Maize	extracellular	53.17	43.79
TraesCS2B01G265400.1	Wheat	extracellular, golgi	53.17	43.23
TraesCS1A01G140100.1	Wheat	extracellular, golgi	52.38	42.31
TraesCS5A01G020100.1	Wheat	golgi	52.38	42.31
BAV58133	Barley	endoplasmic reticulum, extracellular	52.38	42.31
GSMUA_AchrUn_...	Banana	extracellular	53.97	42.24
TraesCSU01G245500.1	Wheat	extracellular	51.59	41.67
TraesCS7B01G051100.1	Wheat	endoplasmic reticulum, extracellular	51.59	41.67
TraesCS5A01G430400.1	Wheat	extracellular	51.59	41.67
TraesCS2D01G230200.1	Wheat	extracellular, golgi	51.59	41.67
TraesCS3A01G142300.1	Wheat	extracellular, plasma membrane	51.59	41.67
TraesCS3B01G430700.1	Wheat	endoplasmic reticulum, extracellular	50.79	41.29
TraesCS7D01G464300.1	Wheat	extracellular, vacuole	50.79	41.03
HORVU7Hr1G089600.1	Barley	extracellular	50.79	41.03
TraesCS6D01G168600.1	Wheat	extracellular, plasma membrane	50.79	41.03
TraesCS3D01G410500.1	Wheat	extracellular, plasma membrane	50.79	41.03
TraesCS3D01G520800.1	Wheat	extracellular, vacuole	50.79	41.03
HORVU4Hr1G059430.1	Barley	extracellular, golgi	50.0	40.38
TraesCS4B01G146500.1	Wheat	extracellular	50.0	40.38
TraesCS7A01G164600.1	Wheat	extracellular	44.44	35.9
HORVU6Hr1G039040.1	Barley	cytosol	30.16	30.16
HORVU2Hr1G034000.1	Barley	cytosol	24.6	24.41
CDY65732	Canola	endoplasmic reticulum, extracellular, golgi	40.48	11.75
CDY45297	Canola	extracellular	8.73	11.34
ATMG00500.1	Thale cress	mitochondrion	10.32	9.22
AT2G07708.1	Thale cress	mitochondrion	10.32	9.22
PGSC0003DMT400034190	Potato	cytosol	1.59	3.57

Protein Annotations

EMBL:ACUP02002475	EnsemblPlants:KRH62975	EnsemblPlantsGene:GLYMA_04G145900	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0016020	GO:GO:0016021	InterPro:YMF19-like_N	PANTHER:PTHR36816
PFAM:PF02326	ProteinID:KRH62975	ProteinID:KRH62975.1	UniParc:UPI000294ACFF	UniProt:K7MS88	MapMan:2.4.6.1.6

Description

hypothetical protein

Coordinates

chr4:+:27097870..27098451

Molecular Weight (calculated)

14877.0 Da

IEP (calculated)

10.496

GRAVY (calculated)

-0.350

Length

126 amino acids

Sequence
(BLAST)

001: MYEVSRVQNK RLEVLKYNHC FSINHASIDK FTYFTQFFWS CLFLFTFYIP IKDGDGVLGI SRILKQPNRL VSNRGNKRRR NDPKSLEDIF RKGFSTGVSY
101: LYSSLFEVSK WCNAIDSLGK RRKITL

Best Arabidopsis Sequence Match ( ATMG00480.1 )
(BLAST)

001: MPQLDKFTYF SQFFWLCLFF FTFYIFICND GDGVLGISRI LKLRNQLLSH RGKTIRSKDP NSLEDLLRKG FSTGVSYMYA SLFEVSQWCK AVDLLGKRRK
101: ITLISCFGEI SGSRGMERNI LYNISKSSPS NTGRWITCRN CRNDIMLIHV VHGQGSIK

Arabidopsis Description

YMF19Atp8 [Source:UniProtKB/TrEMBL;Acc:G1C2R4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.