CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04770
KRH22291
KRH27037
KRH62975

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52300.1	KRH22291	AT2G42580.1	19000166
AT3G52300.1	KRH27037	AT2G42580.1	19000166
AT3G52300.1	KRH62975	ATMG00480.1	12681508
AT3G52300.1	KRH04770	ATMG00640.1	12681508

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34917	Soybean	endoplasmic reticulum, mitochondrion	97.02	97.02
GSMUA_Achr10P...	Banana	cytosol	76.19	88.28
Solyc11g072450.1.1	Tomato	plastid	87.5	87.5
PGSC0003DMT400070407	Potato	cytosol	86.9	86.9
PGSC0003DMT400059780	Potato	cytosol	86.31	86.31
AT3G52300.1	Thale cress	cytosol, mitochondrion	85.12	85.12
VIT_13s0019g03860.t01	Wine grape	cytosol	85.12	85.12
Bra006918.1-P	Field mustard	cytosol	84.52	84.52
CDX78082	Canola	cytosol	84.52	84.52
CDX73643	Canola	cytosol	84.52	84.52
CDY23204	Canola	cytosol	83.33	83.33
CDX95329	Canola	cytosol	83.33	83.33
CDX90607	Canola	cytosol	83.33	83.33
Bra012809.1-P	Field mustard	cytosol	83.33	83.33
CDY29076	Canola	cytosol	82.74	82.74
Bra033442.1-P	Field mustard	cytosol	82.74	82.74
TraesCS2A01G293700.1	Wheat	cytosol, golgi, plastid, unclear	79.17	79.64
HORVU2Hr1G072660.2	Barley	cytosol, plasma membrane, plastid	79.17	79.64
GSMUA_Achr7P09760_001	Banana	cytosol	79.76	79.29
TraesCS2B01G310000.1	Wheat	cytosol	78.57	79.04
TraesCS2D01G291300.1	Wheat	cytosol, plastid	78.57	79.04
EES15140	Sorghum	cytosol	79.17	78.7
Os08t0478200-01	Rice	mitochondrion, plastid	77.98	77.51
KXG35044	Sorghum	cytosol	77.98	77.06
Zm00001d031825_P001	Maize	cytosol	77.38	73.03
Solyc06g005010.1.1	Tomato	plastid	32.14	62.79
HORVU2Hr1G072650.1	Barley	cytosol	79.17	60.73
Solyc06g005020.1.1	Tomato	plastid	49.4	58.04

Protein Annotations

Gene3D:1.20.58.880	EntrezGene:100306184	MapMan:2.4.6.1.4	EMBL:ACUP02012710	InterPro:ATP_synth_F0_dsu_mt	InterPro:ATP_synth_F0_dsu_sf_mt
EMBL:BT090169	UniProt:C6SYC1	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G177700	GO:GO:0000274	GO:GO:0000276
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006139	GO:GO:0006810	GO:GO:0006811
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009987	GO:GO:0015078	GO:GO:0015986	GO:GO:0015992	GO:GO:0016020	GO:GO:0016787
GO:GO:0046933	GO:GO:0099132	InterPro:IPR036228	EnsemblPlants:KRG91849	ProteinID:KRG91849	ProteinID:KRG91849.1
PFAM:PD968187	PFAM:PF05873	PIRSF:PIRSF005514	PANTHER:PTHR12700	SUPFAM:SSF161065	UniParc:UPI0001B15781
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:41514832..41518599

Molecular Weight (calculated)

19924.5 Da

IEP (calculated)

4.933

GRAVY (calculated)

-0.924

Length

168 amino acids

Sequence
(BLAST)

001: MSGTVKKVSD VAFKVGRNID WDGMAKLLVS DEARREFSNL RRAFDEVNSQ LQTKFSQEPE PIDWDYYRKG IGTRLVDMYK EHYESIEIPK FVDTVTPQYK
101: PKFDALLIEL KEAEEKSLKE SERLEKEIAE VQELKKKLST MTADEYFEKH PELRKKFDDE IRNDNWGY

Best Arabidopsis Sequence Match ( AT3G52300.1 )
(BLAST)

001: MSGAGKKIAD VAFKASRTID WDGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDYYRKG IGAGIVDKYK EAYDSIEIPK YVDKVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIAD VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDNWGY

Arabidopsis Description

ATPQATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FT52]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.