Factsheet for Solyc06g005010.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g042990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52300.1	Solyc06g042990.1.1	ATMG00640.1	12681508

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072450.1.1	Tomato	plastid	70.93	36.31
Bra006918.1-P	Field mustard	cytosol	62.79	32.14
CDX73643	Canola	cytosol	62.79	32.14
CDX78082	Canola	cytosol	62.79	32.14
KRH34917	Soybean	endoplasmic reticulum, mitochondrion	62.79	32.14
KRG91849	Soybean	endoplasmic reticulum	62.79	32.14
Bra012809.1-P	Field mustard	cytosol	61.63	31.55
Bra033442.1-P	Field mustard	cytosol	61.63	31.55
CDX90607	Canola	cytosol	61.63	31.55
CDX95329	Canola	cytosol	61.63	31.55
CDY23204	Canola	cytosol	61.63	31.55
CDY29076	Canola	cytosol	61.63	31.55
AT3G52300.1	Thale cress	cytosol, mitochondrion	60.47	30.95
HORVU2Hr1G072660.2	Barley	cytosol, plasma membrane, plastid	59.3	30.54
VIT_13s0019g03860.t01	Wine grape	cytosol	59.3	30.36
TraesCS2D01G291300.1	Wheat	cytosol, plastid	58.14	29.94
TraesCS2A01G293700.1	Wheat	cytosol, golgi, plastid, unclear	58.14	29.94
TraesCS2B01G310000.1	Wheat	cytosol	58.14	29.94
GSMUA_Achr7P09760_001	Banana	cytosol	56.98	28.99
Os08t0478200-01	Rice	mitochondrion, plastid	56.98	28.99
EES15140	Sorghum	cytosol	56.98	28.99
KXG35044	Sorghum	cytosol	56.98	28.82
Zm00001d031825_P001	Maize	cytosol	59.3	28.65
GSMUA_Achr10P...	Banana	cytosol	43.02	25.52
HORVU2Hr1G072650.1	Barley	cytosol	59.3	23.29
Solyc06g005020.1.1	Tomato	plastid	13.95	8.39

Protein Annotations

MapMan:2.4.6.1.4	InterPro:ATP_synth_F0_dsu_sf_mt	GO:GO:0000276	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015078	GO:GO:0015986
GO:GO:0016020	InterPro:IPR036228	UniProt:K4C2Y6	PFAM:PD968187	SUPFAM:SSF161065	EnsemblPlantsGene:Solyc06g005010.1
EnsemblPlants:Solyc06g005010.1.1	UniParc:UPI000276592B	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:9148..9408

Molecular Weight (calculated)

10214.1 Da

IEP (calculated)

5.016

GRAVY (calculated)

-0.283

Length

86 amino acids

Sequence
(BLAST)

1: MSGSVKKIAD VTFKAGKTID WEGMANLLVS DEARKEFSNL RRAFDDVNSQ LQTKFSQVSS FFNRYFLYMD LDLDFDCYWI YYMVKY

Best Arabidopsis Sequence Match ( AT3G52300.2 )
(BLAST)

001: MSGAGKKIAD VAFKASRTID WDGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDYYRKG IGAGIVDKYK EAYDSIEIPK YVDKVTPEYK
101: PKFDALVIGG TERSRTEIAQ GV

Arabidopsis Description

ATPQATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FT52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.