CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04770
KRH22291
KRH27037
KRH62975

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52300.1	KRH22291	AT2G42580.1	19000166
AT3G52300.1	KRH27037	AT2G42580.1	19000166
AT3G52300.1	KRH62975	ATMG00480.1	12681508
AT3G52300.1	KRH04770	ATMG00640.1	12681508

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91849	Soybean	endoplasmic reticulum	97.02	97.02
GSMUA_Achr10P...	Banana	cytosol	73.81	85.52
Solyc11g072450.1.1	Tomato	plastid	85.12	85.12
PGSC0003DMT400070407	Potato	cytosol	84.52	84.52
VIT_13s0019g03860.t01	Wine grape	cytosol	83.93	83.93
PGSC0003DMT400059780	Potato	cytosol	83.93	83.93
CDX78082	Canola	cytosol	83.33	83.33
CDX73643	Canola	cytosol	83.33	83.33
Bra006918.1-P	Field mustard	cytosol	83.33	83.33
AT3G52300.1	Thale cress	cytosol, mitochondrion	82.74	82.74
CDX90607	Canola	cytosol	81.55	81.55
CDX95329	Canola	cytosol	81.55	81.55
CDY23204	Canola	cytosol	81.55	81.55
CDY29076	Canola	cytosol	81.55	81.55
Bra012809.1-P	Field mustard	cytosol	81.55	81.55
Bra033442.1-P	Field mustard	cytosol	80.95	80.95
TraesCS2A01G293700.1	Wheat	cytosol, golgi, plastid, unclear	77.38	77.84
HORVU2Hr1G072660.2	Barley	cytosol, plasma membrane, plastid	76.79	77.25
TraesCS2D01G291300.1	Wheat	cytosol, plastid	76.79	77.25
TraesCS2B01G310000.1	Wheat	cytosol	76.79	77.25
GSMUA_Achr7P09760_001	Banana	cytosol	77.38	76.92
EES15140	Sorghum	cytosol	76.79	76.33
Os08t0478200-01	Rice	mitochondrion, plastid	75.6	75.15
KXG35044	Sorghum	cytosol	75.0	74.12
Zm00001d031825_P001	Maize	cytosol	75.0	70.79
Solyc06g005010.1.1	Tomato	plastid	32.14	62.79
HORVU2Hr1G072650.1	Barley	cytosol	76.79	58.9
Solyc06g005020.1.1	Tomato	plastid	47.62	55.94

Protein Annotations

Gene3D:1.20.58.880	EntrezGene:100500032	MapMan:2.4.6.1.4	EMBL:ACUP02006642	InterPro:ATP_synth_F0_dsu_mt	InterPro:ATP_synth_F0_dsu_sf_mt
EMBL:BT090593	UniProt:C6SZJ2	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G213400	GO:GO:0000274	GO:GO:0000276
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006139	GO:GO:0006810	GO:GO:0006811
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009987	GO:GO:0015078	GO:GO:0015986	GO:GO:0015992	GO:GO:0016020	GO:GO:0016787
GO:GO:0046933	GO:GO:0099132	InterPro:IPR036228	EnsemblPlants:KRH34917	ProteinID:KRH34917	ProteinID:KRH34917.1
PFAM:PD968187	PFAM:PF05873	PIRSF:PIRSF005514	PANTHER:PTHR12700	SUPFAM:SSF161065	UniParc:UPI0001B150C0
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:44577721..44580859

Molecular Weight (calculated)

19957.5 Da

IEP (calculated)

4.839

GRAVY (calculated)

-0.906

Length

168 amino acids

Sequence
(BLAST)

001: MSGTVKKVTD VAFKVGRNID WDGMAKLLVS DEARREFSNL RRAFDEVNSQ LETKFSQEPE PIDWDYYRKG IGTRLVDMYK EHYESIEVPK FVDTVTPQYK
101: TKFDALLIEL KEAEEKSLKE SERLEKEIVE VQELKKKLST MTADEYFEKH PELRKKFDDE IRNDNWGY

Best Arabidopsis Sequence Match ( AT3G52300.1 )
(BLAST)

001: MSGAGKKIAD VAFKASRTID WDGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDYYRKG IGAGIVDKYK EAYDSIEIPK YVDKVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIAD VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDNWGY

Arabidopsis Description

ATPQATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FT52]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.