Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g072450.1.1 | Tomato | plastid | 99.4 | 99.4 |
| PGSC0003DMT400059780 | Potato | cytosol | 95.24 | 95.24 |
| GSMUA_Achr10P... | Banana | cytosol | 76.19 | 88.28 |
| KRG91849 | Soybean | endoplasmic reticulum | 86.9 | 86.9 |
| VIT_13s0019g03860.t01 | Wine grape | cytosol | 86.31 | 86.31 |
| KRH34917 | Soybean | endoplasmic reticulum, mitochondrion | 84.52 | 84.52 |
| Bra006918.1-P | Field mustard | cytosol | 83.93 | 83.93 |
| CDX73643 | Canola | cytosol | 83.93 | 83.93 |
| CDX78082 | Canola | cytosol | 83.93 | 83.93 |
| CDY23204 | Canola | cytosol | 82.74 | 82.74 |
| Bra012809.1-P | Field mustard | cytosol | 82.74 | 82.74 |
| AT3G52300.1 | Thale cress | cytosol, mitochondrion | 82.74 | 82.74 |
| CDX90607 | Canola | cytosol | 82.74 | 82.74 |
| CDX95329 | Canola | cytosol | 82.74 | 82.74 |
| CDY29076 | Canola | cytosol | 82.14 | 82.14 |
| HORVU2Hr1G072660.2 | Barley | cytosol, plasma membrane, plastid | 81.55 | 82.04 |
| Bra033442.1-P | Field mustard | cytosol | 81.55 | 81.55 |
| Os08t0478200-01 | Rice | mitochondrion, plastid | 80.95 | 80.47 |
| TraesCS2A01G293700.1 | Wheat | cytosol, golgi, plastid, unclear | 79.76 | 80.24 |
| TraesCS2B01G310000.1 | Wheat | cytosol | 79.17 | 79.64 |
| TraesCS2D01G291300.1 | Wheat | cytosol, plastid | 79.17 | 79.64 |
| EES15140 | Sorghum | cytosol | 79.76 | 79.29 |
| GSMUA_Achr7P09760_001 | Banana | cytosol | 79.17 | 78.7 |
| KXG35044 | Sorghum | cytosol | 79.17 | 78.24 |
| Zm00001d031825_P001 | Maize | cytosol | 77.38 | 73.03 |
| HORVU2Hr1G072650.1 | Barley | cytosol | 81.55 | 62.56 |
Protein Annotations
| Gene3D:1.20.58.880 | EntrezGene:102602016 | EntrezGene:102603904 | MapMan:2.4.6.1.4 | InterPro:ATP_synth_F0_dsu_mt | InterPro:ATP_synth_F0_dsu_sf_mt |
| ncoils:Coil | GO:GO:0000276 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005743 | GO:GO:0006139 | GO:GO:0006810 |
| GO:GO:0006811 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015078 |
| GO:GO:0015986 | GO:GO:0015992 | GO:GO:0016020 | InterPro:IPR036228 | UniProt:M1CM45 | PFAM:PD968187 |
| PFAM:PF05873 | EnsemblPlantsGene:PGSC0003DMG400027374 | PGSC:PGSC0003DMG400027374 | EnsemblPlants:PGSC0003DMT400070407 | PIRSF:PIRSF005514 | PANTHER:PTHR12700 |
| SUPFAM:SSF161065 | UniParc:UPI0000378503 | RefSeq:XP_006340395.1 | RefSeq:XP_006343458.1 | : | : |
Description
ATP synthase D chain, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400027374]
Coordinates
chr11:-:44053698..44059013
Molecular Weight (calculated)
19808.4 Da
IEP (calculated)
5.057
GRAVY (calculated)
-0.887
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGTVKKIAD VTFKAGRTID WEGMAKLLVT DEARKEFSNL RRAFDDVNSQ LQTKFSQEPE PINWEYYRKG IGSRLVDMYK EAYESIEIPK FEDTVTPQYK
101: PKFDALLVEL KEAEKQSLKE SERLEKEVAE VQELKKKLST MTAEEYFAKH PELKKKFDDE IRNDYWGY
101: PKFDALLVEL KEAEKQSLKE SERLEKEVAE VQELKKKLST MTAEEYFAKH PELKKKFDDE IRNDYWGY
001: MSGAGKKIAD VAFKASRTID WDGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDYYRKG IGAGIVDKYK EAYDSIEIPK YVDKVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIAD VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDNWGY
101: PKFDALLVEL KEAEQKSLKE SERLEKEIAD VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDNWGY
Arabidopsis Description
ATPQATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FT52]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.