CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY17569
CDY17581
CDY42827
CDY45297
CDY45507
CDY45530
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52300.1	CDY42827	AT2G42580.1	19000166
AT3G52300.1	CDY51514	AT2G42580.1	19000166
AT3G52300.1	CDY55390	AT2G42580.1	19000166
AT3G52300.1	CDY61202	AT2G42580.1	19000166
AT3G52300.1	CDY45297	ATMG00480.1	12681508
AT3G52300.1	CDY17569	ATMG00640.1	12681508
AT3G52300.1	CDY45530	ATMG00640.1	12681508
AT3G52300.1	CDY17581	ATMG01080.1	12681508
AT3G52300.1	CDY45507	ATMG01080.1	12681508

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033442.1-P	Field mustard	cytosol	98.21	98.21
CDX90607	Canola	cytosol	98.21	98.21
CDY23204	Canola	cytosol	98.21	98.21
CDX73643	Canola	cytosol	96.43	96.43
CDX78082	Canola	cytosol	96.43	96.43
CDY29076	Canola	cytosol	96.43	96.43
AT3G52300.1	Thale cress	cytosol, mitochondrion	95.24	95.24
PGSC0003DMT400059780	Potato	cytosol	85.12	85.12
GSMUA_Achr10P...	Banana	cytosol	72.62	84.14
KRG91849	Soybean	endoplasmic reticulum	83.33	83.33
PGSC0003DMT400070407	Potato	cytosol	82.74	82.74
Solyc11g072450.1.1	Tomato	plastid	82.14	82.14
KRH34917	Soybean	endoplasmic reticulum, mitochondrion	81.55	81.55
VIT_13s0019g03860.t01	Wine grape	cytosol	81.55	81.55
HORVU2Hr1G072660.2	Barley	cytosol, plasma membrane, plastid	79.17	79.64
GSMUA_Achr7P09760_001	Banana	cytosol	79.17	78.7
EES15140	Sorghum	cytosol	79.17	78.7
TraesCS2A01G293700.1	Wheat	cytosol, golgi, plastid, unclear	77.98	78.44
TraesCS2B01G310000.1	Wheat	cytosol	77.98	78.44
TraesCS2D01G291300.1	Wheat	cytosol, plastid	77.98	78.44
Os08t0478200-01	Rice	mitochondrion, plastid	76.79	76.33
KXG35044	Sorghum	cytosol	75.6	74.71
Zm00001d031825_P001	Maize	cytosol	74.4	70.22
Solyc06g005010.1.1	Tomato	plastid	31.55	61.63
HORVU2Hr1G072650.1	Barley	cytosol	79.17	60.73
Solyc06g005020.1.1	Tomato	plastid	49.4	58.04

Protein Annotations

Gene3D:1.20.58.880	MapMan:2.4.6.1.4	GO:A0A078E457	InterPro:ATP_synth_F0_dsu_mt	InterPro:ATP_synth_F0_dsu_sf_mt	EnsemblPlants:CDX95329
ProteinID:CDX95329	ProteinID:CDX95329.1	ncoils:Coil	GO:GO:0000276	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743
GO:GO:0006139	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015078	GO:GO:0015986	GO:GO:0015992	GO:GO:0016020	EnsemblPlantsGene:GSBRNA2T00100998001
InterPro:IPR036228	PFAM:PD968187	PFAM:PF05873	PIRSF:PIRSF005514	PANTHER:PTHR12700	SUPFAM:SSF161065
UniParc:UPI0004EE776E	:	:	:	:	:

Description

BnaC04g28290D

Coordinates

chrLK031888:+:270352..272140

Molecular Weight (calculated)

19624.0 Da

IEP (calculated)

4.573

GRAVY (calculated)

-0.789

Length

168 amino acids

Sequence
(BLAST)

001: MSGAGKKVAD VAFKASRTID WEGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDFYRKG IGAGIVDMYK EAYDSIEIPK YVDNVTPEYK
101: PKFDALLVEL KEAEQTSLKE SERLEKEIID VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDYWGY

Best Arabidopsis Sequence Match ( AT3G52300.1 )
(BLAST)

001: MSGAGKKIAD VAFKASRTID WDGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDYYRKG IGAGIVDKYK EAYDSIEIPK YVDKVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIAD VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDNWGY

Arabidopsis Description

ATPQATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FT52]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.