CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	mitochondrion
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 16847873

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY17569
CDY17581
CDY42827
CDY45297
CDY45507
CDY45530
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52300.1	CDY42827	AT2G42580.1	19000166
AT3G52300.1	CDY51514	AT2G42580.1	19000166
AT3G52300.1	CDY55390	AT2G42580.1	19000166
AT3G52300.1	CDY61202	AT2G42580.1	19000166
AT3G52300.1	CDY45297	ATMG00480.1	12681508
AT3G52300.1	CDY17569	ATMG00640.1	12681508
AT3G52300.1	CDY45530	ATMG00640.1	12681508
AT3G52300.1	CDY17581	ATMG01080.1	12681508
AT3G52300.1	CDY45507	ATMG01080.1	12681508

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012809.1-P	Field mustard	cytosol	100.0	100.0
CDY23204	Canola	cytosol	100.0	100.0
CDX73643	Canola	cytosol	98.21	98.21
CDX78082	Canola	cytosol	98.21	98.21
CDX95329	Canola	cytosol	98.21	98.21
CDY29076	Canola	cytosol	98.21	98.21
AT3G52300.1	Thale cress	cytosol, mitochondrion	94.64	94.64
PGSC0003DMT400059780	Potato	cytosol	86.9	86.9
GSMUA_Achr10P...	Banana	cytosol	72.62	84.14
KRG91849	Soybean	endoplasmic reticulum	83.33	83.33
PGSC0003DMT400070407	Potato	cytosol	82.74	82.74
VIT_13s0019g03860.t01	Wine grape	cytosol	82.14	82.14
Solyc11g072450.1.1	Tomato	plastid	82.14	82.14
KRH34917	Soybean	endoplasmic reticulum, mitochondrion	81.55	81.55
GSMUA_Achr7P09760_001	Banana	cytosol	80.95	80.47
HORVU2Hr1G072660.2	Barley	cytosol, plasma membrane, plastid	78.57	79.04
EES15140	Sorghum	cytosol	79.17	78.7
TraesCS2A01G293700.1	Wheat	cytosol, golgi, plastid, unclear	77.38	77.84
TraesCS2B01G310000.1	Wheat	cytosol	77.38	77.84
TraesCS2D01G291300.1	Wheat	cytosol, plastid	77.38	77.84
Os08t0478200-01	Rice	mitochondrion, plastid	76.79	76.33
KXG35044	Sorghum	cytosol	75.6	74.71
Zm00001d031825_P001	Maize	cytosol	74.4	70.22
Solyc06g005010.1.1	Tomato	plastid	31.55	61.63
HORVU2Hr1G072650.1	Barley	cytosol	78.57	60.27
Solyc06g005020.1.1	Tomato	plastid	49.4	58.04

Protein Annotations

Gene3D:1.20.58.880	MapMan:2.4.6.1.4	GO:A0A078DNQ5	UniProt:A0A078DNQ5	InterPro:ATP_synth_F0_dsu_mt	InterPro:ATP_synth_F0_dsu_sf_mt
EnsemblPlants:CDX90607	ProteinID:CDX90607	ProteinID:CDX90607.1	ProteinID:CDY23204.1	ncoils:Coil	GO:GO:0000276
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005743	GO:GO:0006139	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015078	GO:GO:0015986	GO:GO:0015992
GO:GO:0016020	EnsemblPlantsGene:GSBRNA2T00151248001	InterPro:IPR036228	PFAM:PD968187	PFAM:PF05873	PIRSF:PIRSF005514
PANTHER:PTHR12700	SUPFAM:SSF161065	UniParc:UPI000254076B	SEG:seg	:	:

Description

BnaA03g41740DATP synthase subunit d, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A078DNQ5]

Coordinates

chrLK031863:-:1094390..1096107

Molecular Weight (calculated)

19653.1 Da

IEP (calculated)

4.646

GRAVY (calculated)

-0.825

Length

168 amino acids

Sequence
(BLAST)

001: MSGAGKKVAD VAFKASRTID WEGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDFYRKG IGSGIVDMYK EAYDSVEIPK YVDNVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIID VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDYWGY

Best Arabidopsis Sequence Match ( AT3G52300.1 )
(BLAST)

001: MSGAGKKIAD VAFKASRTID WDGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDYYRKG IGAGIVDKYK EAYDSIEIPK YVDKVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIAD VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDNWGY

Arabidopsis Description

ATPQATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FT52]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.