Factsheet for Bra012809.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	mitochondrion
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra004709.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52300.1	Bra000267.1-P	AT2G42580.1	19000166
AT3G52300.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90607	Canola	cytosol	100.0	100.0
CDY23204	Canola	cytosol	100.0	100.0
Bra033442.1-P	Field mustard	cytosol	98.81	98.81
Bra006918.1-P	Field mustard	cytosol	98.21	98.21
AT3G52300.1	Thale cress	cytosol, mitochondrion	94.64	94.64
PGSC0003DMT400059780	Potato	cytosol	86.9	86.9
GSMUA_Achr10P...	Banana	cytosol	72.62	84.14
KRG91849	Soybean	endoplasmic reticulum	83.33	83.33
PGSC0003DMT400070407	Potato	cytosol	82.74	82.74
VIT_13s0019g03860.t01	Wine grape	cytosol	82.14	82.14
Solyc11g072450.1.1	Tomato	plastid	82.14	82.14
KRH34917	Soybean	endoplasmic reticulum, mitochondrion	81.55	81.55
GSMUA_Achr7P09760_001	Banana	cytosol	80.95	80.47
HORVU2Hr1G072660.2	Barley	cytosol, plasma membrane, plastid	78.57	79.04
EES15140	Sorghum	cytosol	79.17	78.7
TraesCS2D01G291300.1	Wheat	cytosol, plastid	77.38	77.84
TraesCS2B01G310000.1	Wheat	cytosol	77.38	77.84
TraesCS2A01G293700.1	Wheat	cytosol, golgi, plastid, unclear	77.38	77.84
Os08t0478200-01	Rice	mitochondrion, plastid	76.79	76.33
KXG35044	Sorghum	cytosol	75.6	74.71
Zm00001d031825_P001	Maize	cytosol	74.4	70.22
Solyc06g005010.1.1	Tomato	plastid	31.55	61.63
HORVU2Hr1G072650.1	Barley	cytosol	78.57	60.27
Solyc06g005020.1.1	Tomato	plastid	49.4	58.04

Protein Annotations

Gene3D:1.20.58.880	MapMan:2.4.6.1.4	InterPro:ATP_synth_F0_dsu_mt	InterPro:ATP_synth_F0_dsu_sf_mt	EnsemblPlantsGene:Bra012809	EnsemblPlants:Bra012809.1
EnsemblPlants:Bra012809.1-P	ncoils:Coil	GO:GO:0000276	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006139
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015078	GO:GO:0015986	GO:GO:0015992	GO:GO:0016020	InterPro:IPR036228	UniProt:M4D8J9
PFAM:PD968187	PFAM:PF05873	PIRSF:PIRSF005514	PANTHER:PTHR12700	SUPFAM:SSF161065	UniParc:UPI000254076B
SEG:seg	:	:	:	:	:

Description

AT3G52300 (E=5e-081) ATPQ | ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL); hydrogen ion transmembrane transporter

Coordinates

chrA03:+:22113690..22115017

Molecular Weight (calculated)

19653.1 Da

IEP (calculated)

4.646

GRAVY (calculated)

-0.825

Length

168 amino acids

Sequence
(BLAST)

001: MSGAGKKVAD VAFKASRTID WEGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDFYRKG IGSGIVDMYK EAYDSVEIPK YVDNVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIID VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDYWGY

Best Arabidopsis Sequence Match ( AT3G52300.1 )
(BLAST)

001: MSGAGKKIAD VAFKASRTID WDGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDYYRKG IGAGIVDKYK EAYDSIEIPK YVDKVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIAD VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDNWGY

Arabidopsis Description

ATPQATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FT52]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.