Factsheet for GSMUA_Achr7P09760_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P25160_001
GSMUA_Achr4P08560_001
GSMUA_Achr7P24480_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52300.1	GSMUA_Achr10P...	AT2G42580.1	19000166
AT3G52300.1	GSMUA_Achr3P25160_001	AT2G42580.1	19000166
AT3G52300.1	GSMUA_Achr4P08560_001	AT2G42580.1	19000166
AT3G52300.1	GSMUA_Achr7P24480_001	AT2G42580.1	19000166
AT3G52300.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT3G52300.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT3G52300.1	GSMUA_AchrUn_...	ATMG00480.1	12681508
AT3G52300.1	GSMUA_AchrUn_...	ATMG00640.1	12681508
AT3G52300.1	GSMUA_AchrUn_...	ATMG01080.1	12681508

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	78.7	91.72
Os08t0478200-01	Rice	mitochondrion, plastid	84.62	84.62
EES15140	Sorghum	cytosol	84.02	84.02
HORVU2Hr1G072660.2	Barley	cytosol, plasma membrane, plastid	82.25	83.23
TraesCS2B01G310000.1	Wheat	cytosol	81.07	82.04
TraesCS2D01G291300.1	Wheat	cytosol, plastid	81.07	82.04
KXG35044	Sorghum	cytosol	82.25	81.76
TraesCS2A01G293700.1	Wheat	cytosol, golgi, plastid, unclear	80.47	81.44
Bra006918.1-P	Field mustard	cytosol	80.47	80.95
CDY23204	Canola	cytosol	80.47	80.95
CDX90607	Canola	cytosol	80.47	80.95
CDX78082	Canola	cytosol	80.47	80.95
CDX73643	Canola	cytosol	80.47	80.95
VIT_13s0019g03860.t01	Wine grape	cytosol	80.47	80.95
Bra012809.1-P	Field mustard	cytosol	80.47	80.95
CDY29076	Canola	cytosol	79.88	80.36
Solyc11g072450.1.1	Tomato	plastid	79.29	79.76
KRG91849	Soybean	endoplasmic reticulum	79.29	79.76
PGSC0003DMT400059780	Potato	cytosol	79.29	79.76
AT3G52300.1	Thale cress	cytosol, mitochondrion	79.29	79.76
Bra033442.1-P	Field mustard	cytosol	79.29	79.76
PGSC0003DMT400070407	Potato	cytosol	78.7	79.17
CDX95329	Canola	cytosol	78.7	79.17
KRH34917	Soybean	endoplasmic reticulum, mitochondrion	76.92	77.38
Zm00001d031825_P001	Maize	cytosol	75.15	71.35
HORVU2Hr1G072650.1	Barley	cytosol	82.25	63.47
Solyc06g005010.1.1	Tomato	plastid	28.99	56.98
Solyc06g005020.1.1	Tomato	plastid	43.79	51.75

Protein Annotations

Gene3D:1.20.58.880	MapMan:2.4.6.1.4	InterPro:ATP_synth_F0_dsu_mt	InterPro:ATP_synth_F0_dsu_sf_mt	ncoils:Coil	GO:GO:0000276
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005743	GO:GO:0006139	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015078	GO:GO:0015986	GO:GO:0015992
GO:GO:0016020	EnsemblPlantsGene:GSMUA_Achr7G09760_001	EnsemblPlants:GSMUA_Achr7P09760_001	EnsemblPlants:GSMUA_Achr7T09760_001	InterPro:IPR036228	UniProt:M0TG64
PFAM:PD968187	PFAM:PF05873	PIRSF:PIRSF005514	PANTHER:PTHR12700	SUPFAM:SSF161065	UniParc:UPI00029681F1
SEG:seg	:	:	:	:	:

Description

ATP synthase subunit d, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr7G09760_001]

Coordinates

chr7:+:7944311..7948605

Molecular Weight (calculated)

19689.1 Da

IEP (calculated)

4.802

GRAVY (calculated)

-0.833

Length

169 amino acids

Sequence
(BLAST)

001: MSGNGVKKVA EVAAKATKSI DWDGMAKVLV SDEARKEFAN LRRSFDEVNH QLQTKFSQEP EPIDWEYYRK GIGSRLVDMY KQAYESVEIP KYVDTVTPEY
101: KPKFDALLVE LKEAEKKSLA ESARLEKEIA EIQEMKQKIS TMTADEYFES HPEVKQKFDD EIRNDYWGY

Best Arabidopsis Sequence Match ( AT3G52300.1 )
(BLAST)

001: MSGAGKKIAD VAFKASRTID WDGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDYYRKG IGAGIVDKYK EAYDSIEIPK YVDKVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIAD VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDNWGY

Arabidopsis Description

ATPQATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FT52]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.