CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY17569
CDY17581
CDY42827
CDY45297
CDY45507
CDY45530
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52300.1	CDY42827	AT2G42580.1	19000166
AT3G52300.1	CDY51514	AT2G42580.1	19000166
AT3G52300.1	CDY55390	AT2G42580.1	19000166
AT3G52300.1	CDY61202	AT2G42580.1	19000166
AT3G52300.1	CDY45297	ATMG00480.1	12681508
AT3G52300.1	CDY17569	ATMG00640.1	12681508
AT3G52300.1	CDY45530	ATMG00640.1	12681508
AT3G52300.1	CDY17581	ATMG01080.1	12681508
AT3G52300.1	CDY45507	ATMG01080.1	12681508

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90607	Canola	cytosol	98.21	98.21
CDY23204	Canola	cytosol	98.21	98.21
CDX73643	Canola	cytosol	97.62	97.62
CDX78082	Canola	cytosol	97.62	97.62
CDX95329	Canola	cytosol	96.43	96.43
AT3G52300.1	Thale cress	cytosol, mitochondrion	94.05	94.05
PGSC0003DMT400059780	Potato	cytosol	85.71	85.71
GSMUA_Achr10P...	Banana	cytosol	72.02	83.45
KRG91849	Soybean	endoplasmic reticulum	82.74	82.74
PGSC0003DMT400070407	Potato	cytosol	82.14	82.14
KRH34917	Soybean	endoplasmic reticulum, mitochondrion	81.55	81.55
VIT_13s0019g03860.t01	Wine grape	cytosol	81.55	81.55
Solyc11g072450.1.1	Tomato	plastid	81.55	81.55
GSMUA_Achr7P09760_001	Banana	cytosol	80.36	79.88
HORVU2Hr1G072660.2	Barley	cytosol, plasma membrane, plastid	77.98	78.44
EES15140	Sorghum	cytosol	78.57	78.11
TraesCS2A01G293700.1	Wheat	cytosol, golgi, plastid, unclear	76.79	77.25
TraesCS2B01G310000.1	Wheat	cytosol	76.79	77.25
TraesCS2D01G291300.1	Wheat	cytosol, plastid	76.79	77.25
Os08t0478200-01	Rice	mitochondrion, plastid	76.19	75.74
KXG35044	Sorghum	cytosol	75.0	74.12
Zm00001d031825_P001	Maize	cytosol	73.81	69.66
Solyc06g005010.1.1	Tomato	plastid	31.55	61.63
HORVU2Hr1G072650.1	Barley	cytosol	77.98	59.82
Solyc06g005020.1.1	Tomato	plastid	48.81	57.34

Protein Annotations

Gene3D:1.20.58.880	MapMan:2.4.6.1.4	GO:A0A078GU88	UniProt:A0A078GU88	InterPro:ATP_synth_F0_dsu_mt	InterPro:ATP_synth_F0_dsu_sf_mt
EnsemblPlants:CDY29076	ProteinID:CDY29076	ProteinID:CDY29076.1	ncoils:Coil	GO:GO:0000276	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0006139	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015078	GO:GO:0015986	GO:GO:0015992	GO:GO:0016020
EnsemblPlantsGene:GSBRNA2T00041820001	InterPro:IPR036228	PFAM:PD968187	PFAM:PF05873	PIRSF:PIRSF005514	PANTHER:PTHR12700
SUPFAM:SSF161065	UniParc:UPI0004EE8D87	SEG:seg	:	:	:

Description

BnaC07g32820DATP synthase subunit d, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A078GU88]

Coordinates

chrLK032229:+:451846..453393

Molecular Weight (calculated)

19563.0 Da

IEP (calculated)

4.716

GRAVY (calculated)

-0.797

Length

168 amino acids

Sequence
(BLAST)

001: MSGAGKKVAD VAFKASRTID WEGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDFYRKG IGSGIVDLYK EAYDSVEIPK YVDNVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIVG VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDYWGY

Best Arabidopsis Sequence Match ( AT3G52300.2 )
(BLAST)

001: MSGAGKKIAD VAFKASRTID WDGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDYYRKG IGAGIVDKYK EAYDSIEIPK YVDKVTPEYK
101: PKFDALVIGG TERSRTEIAQ GV

Arabidopsis Description

ATPQATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FT52]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.