CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	mitochondrion
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52300.1	EES01073	AT2G42580.1	19000166
AT3G52300.1	EES02247	AT2G42580.1	19000166
AT3G52300.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35044	Sorghum	cytosol	91.12	90.59
Os08t0478200-01	Rice	mitochondrion, plastid	89.94	89.94
GSMUA_Achr10P...	Banana	cytosol	75.15	87.59
GSMUA_Achr7P09760_001	Banana	cytosol	84.02	84.02
VIT_13s0019g03860.t01	Wine grape	cytosol	81.66	82.14
Solyc11g072450.1.1	Tomato	plastid	79.88	80.36
Zm00001d031825_P001	Maize	cytosol	84.62	80.34
PGSC0003DMT400070407	Potato	cytosol	79.29	79.76
CDX95329	Canola	cytosol	78.7	79.17
CDY23204	Canola	cytosol	78.7	79.17
CDX90607	Canola	cytosol	78.7	79.17
CDX78082	Canola	cytosol	78.7	79.17
KRG91849	Soybean	endoplasmic reticulum	78.7	79.17
CDX73643	Canola	cytosol	78.7	79.17
Bra012809.1-P	Field mustard	cytosol	78.7	79.17
Bra006918.1-P	Field mustard	cytosol	78.7	79.17
AT3G52300.1	Thale cress	cytosol, mitochondrion	78.7	79.17
CDY29076	Canola	cytosol	78.11	78.57
PGSC0003DMT400059780	Potato	cytosol	78.11	78.57
Bra033442.1-P	Field mustard	cytosol	77.51	77.98
KRH34917	Soybean	endoplasmic reticulum, mitochondrion	76.33	76.79
Solyc06g005010.1.1	Tomato	plastid	28.99	56.98
Solyc06g005020.1.1	Tomato	plastid	44.97	53.15

Protein Annotations

Gene3D:1.20.58.880	MapMan:2.4.6.1.4	EntrezGene:8056907	InterPro:ATP_synth_F0_dsu_mt	InterPro:ATP_synth_F0_dsu_sf_mt	UniProt:C5YMN5
ncoils:Coil	EnsemblPlants:EES15140	ProteinID:EES15140	ProteinID:EES15140.1	GO:GO:0000274	GO:GO:0000276
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006139	GO:GO:0006810	GO:GO:0006811
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009987	GO:GO:0015078	GO:GO:0015986	GO:GO:0015992	GO:GO:0016020	GO:GO:0016787
GO:GO:0046933	GO:GO:0099132	InterPro:IPR036228	PFAM:PD968187	PFAM:PF05873	PIRSF:PIRSF005514
PANTHER:PTHR12700	EnsemblPlantsGene:SORBI_3007G159700	SUPFAM:SSF161065	unigene:Sbi.12277	UniParc:UPI0001A87CF3	RefSeq:XP_002445645.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:59406245..59409313

Molecular Weight (calculated)

19761.5 Da

IEP (calculated)

5.234

GRAVY (calculated)

-0.834

Length

169 amino acids

Sequence
(BLAST)

001: MSGNGAKKVV DVAVKAAKAI DWDGMAKMLV SDEARKEFAT LRRTFEDVNH QLQTKFSQEP QPIDWEYYRK GIGSKVVDMY KEAYESIEIP KYVDTVTPEY
101: KPKFDALVVE LKEAEKASLK ESERIEKEIA ELKEMKKKIS TMTADEYFEK HPELKKKFDD EIRNDYWGY

Best Arabidopsis Sequence Match ( AT3G52300.1 )
(BLAST)

001: MSGAGKKIAD VAFKASRTID WDGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDYYRKG IGAGIVDKYK EAYDSIEIPK YVDKVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIAD VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDNWGY

Arabidopsis Description

ATPQATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FT52]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.