Factsheet for VIT_13s0019g03860.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0246g00220.t01
VIT_00s0438g00020.t01
VIT_01s0146g00390.t01
VIT_12s0028g02240.t01
VIT_12s0055g00090.t01
VIT_18s0001g09830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52300.1	VIT_12s0028g02240.t01	AT2G42580.1	19000166
AT3G52300.1	VIT_18s0001g09830.t01	AT2G42580.1	19000166
AT3G52300.1	VIT_00s0246g00220.t01	ATMG00480.1	12681508
AT3G52300.1	VIT_01s0146g00390.t01	ATMG00480.1	12681508
AT3G52300.1	VIT_00s0438g00020.t01	ATMG01080.1	12681508
AT3G52300.1	VIT_12s0055g00090.t01	ATMG01080.1	12681508

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	75.6	87.59
Solyc11g072450.1.1	Tomato	plastid	86.9	86.9
PGSC0003DMT400070407	Potato	cytosol	86.31	86.31
PGSC0003DMT400059780	Potato	cytosol	85.71	85.71
KRG91849	Soybean	endoplasmic reticulum	85.12	85.12
KRH34917	Soybean	endoplasmic reticulum, mitochondrion	83.93	83.93
AT3G52300.1	Thale cress	cytosol, mitochondrion	83.33	83.33
Bra006918.1-P	Field mustard	cytosol	82.14	82.14
CDY23204	Canola	cytosol	82.14	82.14
CDX90607	Canola	cytosol	82.14	82.14
CDX78082	Canola	cytosol	82.14	82.14
CDX73643	Canola	cytosol	82.14	82.14
Bra012809.1-P	Field mustard	cytosol	82.14	82.14
EES15140	Sorghum	cytosol	82.14	81.66
CDY29076	Canola	cytosol	81.55	81.55
CDX95329	Canola	cytosol	81.55	81.55
Bra033442.1-P	Field mustard	cytosol	80.95	80.95
HORVU2Hr1G072660.2	Barley	cytosol, plasma membrane, plastid	80.36	80.84
GSMUA_Achr7P09760_001	Banana	cytosol	80.95	80.47
TraesCS2A01G293700.1	Wheat	cytosol, golgi, plastid, unclear	77.98	78.44
TraesCS2B01G310000.1	Wheat	cytosol	77.38	77.84
TraesCS2D01G291300.1	Wheat	cytosol, plastid	77.38	77.84
Os08t0478200-01	Rice	mitochondrion, plastid	77.98	77.51
KXG35044	Sorghum	cytosol	77.98	77.06
Zm00001d031825_P001	Maize	cytosol	77.98	73.6
HORVU2Hr1G072650.1	Barley	cytosol	80.36	61.64
Solyc06g005010.1.1	Tomato	plastid	30.36	59.3
Solyc06g005020.1.1	Tomato	plastid	48.81	57.34

Protein Annotations

Gene3D:1.20.58.880	EntrezGene:100241092	wikigene:100241092	MapMan:2.4.6.1.4	UniProt:A5AY42	EMBL:AM439845
InterPro:ATP_synth_F0_dsu_mt	InterPro:ATP_synth_F0_dsu_sf_mt	ProteinID:CAN60726	ProteinID:CAN60726.1	ProteinID:CCB56209	ProteinID:CCB56209.1
ncoils:Coil	EMBL:FN595998	GO:GO:0000274	GO:GO:0000276	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0006139	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015078
GO:GO:0015986	GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0046933	GO:GO:0099132
InterPro:IPR036228	EntrezGene:LOC100241092	wikigene:LOC100241092	PFAM:PD968187	PFAM:PF05873	PIRSF:PIRSF005514
PANTHER:PTHR12700	SUPFAM:SSF161065	TIGR:TC61363	UniParc:UPI000151F9AF	ArrayExpress:VIT_13s0019g03860	EnsemblPlantsGene:VIT_13s0019g03860
EnsemblPlants:VIT_13s0019g03860.t01	unigene:Vvi.10995	RefSeq:XP_002277452	RefSeq:XP_002277452.1	SEG:seg	:

Description

ATP synthase subunit d, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A5AY42]

Coordinates

chr13:+:5101543..5107051

Molecular Weight (calculated)

19769.4 Da

IEP (calculated)

5.057

GRAVY (calculated)

-0.829

Length

168 amino acids

Sequence
(BLAST)

001: MSGTGKKIVD VAFKASRTID WDGMAKLIVT EEARKEFATL RRAFDEVNST LQTKFSQEPE PIDWEYYRRG IGSRLVDMYK EAYESISVPK YVDTVTPQYK
101: PKFDALLVEL KEAEEKSLKE SERLEKEIAE VQELKKKIST MTANEYFEKH PELKKKFDDE IRNDYWGY

Best Arabidopsis Sequence Match ( AT3G52300.1 )
(BLAST)

001: MSGAGKKIAD VAFKASRTID WDGMAKVLVT DEARREFSNL RRAFDEVNTQ LQTKFSQEPE PIDWDYYRKG IGAGIVDKYK EAYDSIEIPK YVDKVTPEYK
101: PKFDALLVEL KEAEQKSLKE SERLEKEIAD VQEISKKLST MTADEYFEKH PELKKKFDDE IRNDNWGY

Arabidopsis Description

ATPQATP synthase subunit d, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FT52]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.