Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017593.1-P | Field mustard | cytosol | 89.83 | 89.83 |
| CDY60536 | Canola | cytosol | 89.83 | 89.83 |
| AT1G53400.1 | Thale cress | cytosol | 68.64 | 71.05 |
| AT1G16960.1 | Thale cress | nucleus | 60.17 | 62.28 |
| CDY23106 | Canola | cytosol | 61.86 | 55.3 |
Protein Annotations
| Gene3D:1.20.225.20 | MapMan:35.2 | EntrezGene:834613 | UniProt:A0A178UML9 | ProteinID:AED95291.1 | ArrayExpress:AT5G45740 |
| EnsemblPlantsGene:AT5G45740 | RefSeq:AT5G45740 | TAIR:AT5G45740 | RefSeq:AT5G45740-TAIR-G | EnsemblPlants:AT5G45740.1 | TAIR:AT5G45740.1 |
| InterPro:DC-UbP/UBTD2_N | InterPro:DC-UbP/UBTD2_N_sf | UniProt:F4KEM2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | GO:GO:0043130 | InterPro:IPR038169 | RefSeq:NP_199386.2 | ProteinID:OAO94252.1 | PFAM:PF16455 |
| PO:PO:0000293 | PANTHER:PTHR13609 | PANTHER:PTHR13609:SF13 | UniParc:UPI000173957B | : | : |
Description
Ubiquitin domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4KEM2]
Coordinates
chr5:-:18556539..18558406
Molecular Weight (calculated)
13410.9 Da
IEP (calculated)
7.417
GRAVY (calculated)
-0.727
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCIGSSQAR NEGGAKRKKI MKPKPWAHTE PITRAQLTNM REEFWDTSPH YGGQREIWEA LRAAAEADLK LAQTIVDSAG VIVQNRDLTL CWDERGARYE
101: LPRYVLSEPT NLIREEGQ
101: LPRYVLSEPT NLIREEGQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.