Factsheet for GSMUA_Achr5P04570_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr3P25160_001
GSMUA_Achr4P08560_001
GSMUA_Achr5P04570_001
GSMUA_Achr7P24480_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07440.1	GSMUA_Achr5P04570_001	AT2G29310.1	21798944
AT1G07450.1	GSMUA_Achr5P04570_001	AT2G29320.1	21798944
AT1G07450.1	GSMUA_Achr5P04570_001	AT2G29350.1	21798944
AT2G29310.1	GSMUA_Achr5P04570_001	AT1G07450.1	21798944
AT2G29310.1	GSMUA_Achr5P04570_001	AT2G29310.1	21798944
AT2G29320.1	GSMUA_Achr5P04570_001	AT2G29310.1	21798944
AT2G29330.1	GSMUA_Achr5P04570_001	AT2G29320.1	21798944
AT2G29340.1	GSMUA_Achr10P...	AT2G42580.1	19000166
AT2G29340.1	GSMUA_Achr3P25160_001	AT2G42580.1	19000166
AT2G29340.1	GSMUA_Achr4P08560_001	AT2G42580.1	19000166
AT2G29340.1	GSMUA_Achr7P24480_001	AT2G42580.1	19000166
AT2G29340.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT2G29340.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT2G29350.1	GSMUA_Achr5P04570_001	AT2G29310.1	21798944
AT2G29350.1	GSMUA_Achr5P04570_001	AT2G29320.1	21798944
AT2G29350.1	GSMUA_Achr5P04570_001	AT2G29350.1	21798944
AT2G29350.1	GSMUA_Achr5P04570_001	AT2G29360.1	21798944
AT2G29350.1	GSMUA_Achr10P...	AT5G06060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g05440.t01	Wine grape	cytosol	40.16	62.2
Solyc03g096650.1.1	Tomato	cytosol	38.58	55.06
AT2G29170.1	Thale cress	cytosol	44.88	53.27
CDY72061	Canola	cytosol	43.31	50.46
VIT_06s0004g05310.t01	Wine grape	cytosol	44.88	50.44
VIT_06s0004g05400.t01	Wine grape	cytosol	43.31	49.55
KRH29740	Soybean	cytosol	29.13	37.76
Bra027962.1-P	Field mustard	cytosol	49.61	36.42
CDY64214	Canola	mitochondrion	48.03	35.67
GSMUA_Achr3P01040_001	Banana	cytosol	22.05	29.17
GSMUA_Achr9P03440_001	Banana	cytosol	59.06	27.68
CDY40186	Canola	cytosol	44.88	27.54
GSMUA_Achr9P03470_001	Banana	cytosol	58.27	27.51
GSMUA_Achr11P...	Banana	cytosol	57.48	27.24
GSMUA_Achr9P03430_001	Banana	cytosol, mitochondrion, plastid	55.12	26.72
AT1G07440.1	Thale cress	mitochondrion	55.91	26.69
Bra039755.1-P	Field mustard	mitochondrion	55.91	26.69
CDY16437	Canola	mitochondrion	55.91	26.69
CDY52942	Canola	mitochondrion	55.12	26.32
VIT_06s0004g05360.t01	Wine grape	cytosol, mitochondrion, plastid	49.61	26.25
VIT_06s0004g05380.t01	Wine grape	plastid	55.12	25.93
VIT_06s0004g05430.t01	Wine grape	mitochondrion, nucleus, peroxisome	54.33	25.56
KRH24731	Soybean	nucleus	53.54	25.47
Bra030683.1-P	Field mustard	cytosol, mitochondrion, plastid	51.97	25.19
Bra015580.1-P	Field mustard	mitochondrion	52.76	25.19
CDY06706	Canola	mitochondrion	52.76	25.19
KRH24733	Soybean	nucleus	51.97	24.91
CDY10276	Canola	mitochondrion	51.97	24.81
CDY14610	Canola	mitochondrion	51.97	24.81
CDX86485	Canola	cytosol, peroxisome, plastid	51.18	24.81
CDY68057	Canola	cytosol	51.18	24.81
VIT_06s0004g05320.t01	Wine grape	endoplasmic reticulum, peroxisome, plastid	48.82	24.6
VIT_06s0004g05370.t01	Wine grape	peroxisome	48.82	24.6
CDY40171	Canola	cytosol	42.52	24.43
GSMUA_Achr10P...	Banana	cytosol	51.97	24.35
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	51.18	24.16
AT2G29290.2	Thale cress	plastid	48.82	23.66
CDX86486	Canola	cytosol, peroxisome, plastid	48.82	23.66
CDY09823	Canola	peroxisome	50.39	23.62
AT2G29150.1	Thale cress	peroxisome	49.61	23.51
CDY51372	Canola	plastid	51.18	23.3
Bra018393.1-P	Field mustard	cytosol	48.03	23.28
Bra018400.1-P	Field mustard	cytosol, nucleus, plastid	48.03	23.28
CDY45434	Canola	cytosol, nucleus, plastid	48.03	23.28
CDY31770	Canola	plastid	42.52	23.28
CDX97893	Canola	mitochondrion	49.61	23.25
CDY09824	Canola	mitochondrion	49.61	23.25
AT1G07450.1	Thale cress	cytosol, nucleus, peroxisome	47.24	23.08
AT2G29350.1	Thale cress	plastid	48.82	23.05
CDX97895	Canola	cytosol	42.52	22.98
CDY31774	Canola	cytosol	42.52	22.98
Bra031575.1-P	Field mustard	plastid	47.24	22.9
Bra039973.1-P	Field mustard	plastid	47.24	22.9
CDY06260	Canola	plastid	47.24	22.9
CDY09917	Canola	cytosol	47.24	22.9
CDY31773	Canola	plastid	47.24	22.9
CDY40183	Canola	plastid	47.24	22.9
AT2G29360.1	Thale cress	cytosol	48.82	22.88
AT2G29370.1	Thale cress	peroxisome	48.03	22.76
CDX95752	Canola	cytosol	42.52	22.69
Bra018396.1-P	Field mustard	cytosol	46.46	22.52
CDY45438	Canola	cytosol	46.46	22.52
Bra039976.1-P	Field mustard	cytosol	48.03	22.51
CDY31776	Canola	cytosol, peroxisome, plastid	48.03	22.51
CDY62820	Canola	cytosol, endoplasmic reticulum, peroxisome	46.46	22.43
GSMUA_Achr5P04560_001	Banana	cytosol	60.63	22.32
AT2G29330.1	Thale cress	cytosol, peroxisome, plastid	45.67	22.31
CDX95750	Canola	cytosol	48.03	22.26
GSMUA_Achr9P03420_001	Banana	mitochondrion	52.76	22.26
CDY40179	Canola	cytosol, peroxisome, plastid	45.67	22.22
AT2G30670.1	Thale cress	cytosol, nucleus, peroxisome	45.67	22.14
Bra018399.1-P	Field mustard	cytosol, peroxisome, plastid	45.67	22.14
Bra039513.1-P	Field mustard	peroxisome	45.67	22.14
Bra039971.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	45.67	22.14
CDX83307	Canola	peroxisome	45.67	22.14
CDY31772	Canola	cytosol, peroxisome, plastid	45.67	22.14
CDY40165	Canola	plastid	45.67	22.14
CDY40182	Canola	cytosol, peroxisome, plastid	45.67	22.14
CDY40188	Canola	cytosol, peroxisome, plasma membrane	45.67	22.14
Bra039969.1-P	Field mustard	cytosol	45.67	22.05
VIT_06s0004g05390.t01	Wine grape	cytosol, plasma membrane, plastid	42.52	21.95
AT2G29310.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	44.88	21.76
Bra018391.1-P	Field mustard	cytosol	44.88	21.76
CDY31768	Canola	cytosol, peroxisome, plastid	44.88	21.76
CDY40175	Canola	plasma membrane	44.88	21.76
CDY45432	Canola	cytosol	44.88	21.76
CDY45435	Canola	cytosol, peroxisome, plastid	44.88	21.76
Bra039974.1-P	Field mustard	cytosol, plasma membrane, plastid	44.88	21.67
CDY40177	Canola	cytosol	47.24	21.66
Bra000476.1-P	Field mustard	cytosol, peroxisome, plastid	44.09	21.37
Bra039514.1-P	Field mustard	cytosol, peroxisome, plastid	44.09	21.37
Bra039967.1-P	Field mustard	plastid	44.09	21.37
CDX95751	Canola	peroxisome	44.09	21.37
CDX97899	Canola	peroxisome	44.09	21.37
AT2G29320.1	Thale cress	mitochondrion	44.88	21.19
Bra000477.1-P	Field mustard	plastid	43.31	20.99
Bra018405.1-P	Field mustard	cytosol	43.31	20.99
CDX83306	Canola	plastid	43.31	20.99
CDX95753	Canola	cytosol, peroxisome, plastid	43.31	20.99
CDY40185	Canola	plastid	43.31	20.99
VIT_06s0004g05330.t01	Wine grape	peroxisome	40.94	20.47
AT2G29300.2	Thale cress	extracellular	45.67	20.28
CDY45433	Canola	cytosol	37.8	19.59
AT2G29340.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	46.46	19.22
Bra018401.1-P	Field mustard	cytosol	37.8	18.97
CDX97890	Canola	cytosol	50.39	18.88
GSMUA_Achr6P34030_001	Banana	cytosol	53.54	18.78
CDX97897	Canola	cytosol, extracellular	33.86	18.61
CDY65683	Canola	cytosol, mitochondrion	55.12	17.54
Bra039966.1-P	Field mustard	cytosol	38.58	17.01
GSMUA_Achr9P03450_001	Banana	cytosol, nucleus, peroxisome	59.06	15.92
Bra027961.1-P	Field mustard	cytosol	36.22	15.18
CDY45441	Canola	cytosol	26.77	15.18
GSMUA_Achr10P...	Banana	cytosol	55.91	13.17
Bra018402.1-P	Field mustard	cytosol	22.05	12.79
CDY31767	Canola	plastid	50.39	11.37
GSMUA_Achr2P01480_001	Banana	peroxisome	25.98	11.11
GSMUA_Achr3P23590_001	Banana	peroxisome	24.41	10.44
GSMUA_Achr4P29030_001	Banana	cytosol	22.83	9.93
GSMUA_Achr4P24690_001	Banana	cytosol	22.05	9.4
Bra039977.1-P	Field mustard	plastid	12.6	8.29
CDY50145	Canola	plastid	46.46	8.15
Bra018404.1-P	Field mustard	cytosol	11.02	7.53
GSMUA_Achr1P18200_001	Banana	cytosol	10.24	7.47
GSMUA_Achr3P01030_001	Banana	mitochondrion	12.6	7.24
VIT_06s0004g05450.t01	Wine grape	plasma membrane	10.24	7.22
CDY16436	Canola	endoplasmic reticulum, vacuole	5.51	6.67

Protein Annotations

EnsemblPlants:GSMUA_Achr5P04570_001	EnsemblPlants:GSMUA_Achr5T04570_001	EnsemblPlantsGene:GSMUA_Achr5G04570_001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR42898	PANTHER:PTHR42898:SF2	PFAM:PF00106	SEG:seg	SUPFAM:SSF51735	UniParc:UPI000296DC48
UniProt:M0SVN6	MapMan:35.1	:	:	:	:

Description

tropinone reductase 2, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G04570_001]

Coordinates

chr5:-:3365587..3367442

Molecular Weight (calculated)

14097.9 Da

IEP (calculated)

8.530

GRAVY (calculated)

-0.410

Length

127 amino acids

Sequence
(BLAST)

001: MSHPPSRRDN KVVDGRWSLL GTTALVTGGT KGIGHAIVEE LARFGAAVHT CARNEAELET CLKKWEGMKL NVTGSACDVS LPAEREKLKE RVASFFHGKL
101: HILESTMWEQ QFGRHPQITP LRTTDMS

Best Arabidopsis Sequence Match ( AT1G07440.2 )
(BLAST)

001: MAGAEQSQRW SLKAKTVLVT GGTKGIGHAI VEEFAGFGAV IHTCARNEYE LNECLSKWQK KGFQVTGSVC DASLRPEREK LMQTVSSMFG GKLDILINNL
101: GAIRSKPTLD YTAEDFSFHI STNLESAYHL SQLAHPLLKA SGCGNIIFMS SIAGVVSASV GSIYSATKGL YTNY

Arabidopsis Description

Tropinone reductase homolog At1g07440 [Source:UniProtKB/Swiss-Prot;Acc:P0DKI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.