Factsheet for Bra018400.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra039513.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29330.1	Bra039513.1-P	AT2G29320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45434	Canola	cytosol, nucleus, plastid	99.62	99.62
CDY40183	Canola	plastid	95.8	95.8
AT2G29330.1	Thale cress	cytosol, peroxisome, plastid	82.44	83.08
Bra018391.1-P	Field mustard	cytosol	81.3	81.3
Bra039514.1-P	Field mustard	cytosol, peroxisome, plastid	79.01	79.01
Bra018393.1-P	Field mustard	cytosol	79.01	79.01
Bra039971.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	79.01	79.01
Bra039974.1-P	Field mustard	cytosol, plasma membrane, plastid	79.01	78.71
Bra000476.1-P	Field mustard	cytosol, peroxisome, plastid	78.63	78.63
Bra018396.1-P	Field mustard	cytosol	78.63	78.63
Bra039973.1-P	Field mustard	plastid	78.63	78.63
Bra018405.1-P	Field mustard	cytosol	78.24	78.24
Bra018404.1-P	Field mustard	cytosol	55.34	77.96
Bra039967.1-P	Field mustard	plastid	77.86	77.86
Bra039969.1-P	Field mustard	cytosol	77.86	77.57
Bra039513.1-P	Field mustard	peroxisome	76.72	76.72
Bra000477.1-P	Field mustard	plastid	76.34	76.34
Bra018401.1-P	Field mustard	cytosol	73.66	76.28
Bra018402.1-P	Field mustard	cytosol	63.74	76.26
Bra018399.1-P	Field mustard	cytosol, peroxisome, plastid	75.19	75.19
Bra015580.1-P	Field mustard	mitochondrion	70.23	69.17
Bra039966.1-P	Field mustard	cytosol	75.57	68.75
Bra030683.1-P	Field mustard	cytosol, mitochondrion, plastid	67.94	67.94
Bra039755.1-P	Field mustard	mitochondrion	68.32	67.29
Bra031575.1-P	Field mustard	plastid	66.03	66.03
Bra027962.1-P	Field mustard	cytosol	42.75	64.74
VIT_06s0004g05440.t01	Wine grape	cytosol	20.23	64.63
Bra028744.1-P	Field mustard	cytosol	63.36	63.12
Bra039976.1-P	Field mustard	cytosol	65.27	63.1
VIT_06s0004g05320.t01	Wine grape	endoplasmic reticulum, peroxisome, plastid	60.69	63.1
Solyc03g096650.1.1	Tomato	cytosol	21.37	62.92
KRH24731	Soybean	nucleus	63.74	62.55
VIT_06s0004g05400.t01	Wine grape	cytosol	26.34	62.16
Bra009159.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plasma membrane	61.83	61.83
VIT_06s0004g05370.t01	Wine grape	peroxisome	59.16	61.51
VIT_06s0004g05380.t01	Wine grape	plastid	63.36	61.48
Bra039977.1-P	Field mustard	plastid	45.04	61.14
KRH24733	Soybean	nucleus	61.07	60.38
VIT_06s0004g05430.t01	Wine grape	mitochondrion, nucleus, peroxisome	61.83	60.0
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	61.45	59.85
VIT_06s0004g05310.t01	Wine grape	cytosol	25.57	59.29
VIT_06s0004g05330.t01	Wine grape	peroxisome	57.25	59.06
VIT_06s0004g05360.t01	Wine grape	cytosol, mitochondrion, plastid	51.15	55.83
KRH29740	Soybean	cytosol	20.61	55.1
VIT_06s0004g05390.t01	Wine grape	cytosol, plasma membrane, plastid	50.0	53.25
Bra027961.1-P	Field mustard	cytosol	61.07	52.81
VIT_06s0004g05450.t01	Wine grape	plasma membrane	35.11	51.11
GSMUA_Achr5P04570_001	Banana	cytosol	23.28	48.03
Bra029705.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	27.48	44.17
Bra029476.1-P	Field mustard	peroxisome	32.06	32.94
Bra020854.1-P	Field mustard	cytosol, mitochondrion, peroxisome	29.77	30.35
Bra021324.1-P	Field mustard	cytosol	28.24	25.61
Bra034728.1-P	Field mustard	cytosol	24.05	21.43
Bra001471.1-P	Field mustard	peroxisome	23.28	20.47

Protein Annotations

EnsemblPlants:Bra018400.1	EnsemblPlants:Bra018400.1-P	EnsemblPlantsGene:Bra018400	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR42898	PANTHER:PTHR42898:SF7	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	SEG:seg
SUPFAM:SSF51735	UniParc:UPI0002547D73	UniProt:M4DPF9	MapMan:50.1.1	:	:

Description

AT2G29330 (E=7e-115) TRI | TRI (tropinone reductase); binding / catalytic/ oxidoreductase

Coordinates

chrA05:-:7979687..7980858

Molecular Weight (calculated)

27895.3 Da

IEP (calculated)

6.758

GRAVY (calculated)

0.076

Length

262 amino acids

Sequence
(BLAST)

001: MDKRWSLKGM TALVTGGASG IGHAIVEELA GFGCKVHACD LSETLLNQSL CEWKKKGFQV SGSVCDVSCR SEREKLIQTV STMFNGKLNI LVNNVGSARV
101: KPTTEYLEDD FSFHISTNLE SAYHLSQLSH PFLKASGSGS IVFISSVAGV VSIDCGSMYG LTKGALNQLA RNLACEWAKD GIRANAVAPN FIYTALAQPF
201: LDDAGFNKSL STRTPLGRPG EPEEVASLVA FLCLPAASYI TGQSICVDGG LTVNGFSYQP HA

Best Arabidopsis Sequence Match ( AT2G29330.1 )
(BLAST)

001: MDKRWSLQGL TALVTGGASG IGHAIVEELA GFGAKIHVCD ISKTLLNQSL SEWEKKGFQV SGSVCDASNR LERETLMQTV TTIFDGKLNI LVNNVGTIRT
101: KPTIEYEAED FSFLISTNLE SAYHLSQLSH PLLKASGNGI ITFISSAAGI VSFDAASIYG LTKGALNQLA RNLACEWAKD GIRANAVAPN FITTALAKPF
201: LEDAGFNEIL SSRTPLGRAG EPREVASLVA FLCLPAASYI TGQTICVDGG LTVNGFSYQP

Arabidopsis Description

TRITropinone reductase homolog At2g29330 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW16]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.