Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G29330.1 | CDX83307 | AT2G29320.1 | 21798944 |
| AT2G29330.1 | CDX95751 | AT2G29320.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45434 | Canola | cytosol, nucleus, plastid | 96.18 | 96.18 |
| Bra018400.1-P | Field mustard | cytosol, nucleus, plastid | 95.8 | 95.8 |
| AT2G29330.1 | Thale cress | cytosol, peroxisome, plastid | 82.82 | 83.46 |
| CDY40175 | Canola | plasma membrane | 81.3 | 81.3 |
| CDY31772 | Canola | cytosol, peroxisome, plastid | 80.15 | 80.15 |
| CDY40171 | Canola | cytosol | 67.18 | 79.64 |
| CDY40188 | Canola | cytosol, peroxisome, plasma membrane | 79.01 | 79.01 |
| CDX97899 | Canola | peroxisome | 78.63 | 78.63 |
| CDY45432 | Canola | cytosol | 78.63 | 78.63 |
| CDY45441 | Canola | cytosol | 67.18 | 78.57 |
| CDY31774 | Canola | cytosol | 70.23 | 78.3 |
| CDY45438 | Canola | cytosol | 78.24 | 78.24 |
| CDY31768 | Canola | cytosol, peroxisome, plastid | 78.24 | 78.24 |
| CDY40179 | Canola | cytosol, peroxisome, plastid | 77.86 | 78.16 |
| CDY62820 | Canola | cytosol, endoplasmic reticulum, peroxisome | 78.24 | 77.95 |
| CDX97895 | Canola | cytosol | 69.85 | 77.87 |
| CDY40165 | Canola | plastid | 77.48 | 77.48 |
| CDY40186 | Canola | cytosol | 61.07 | 77.29 |
| CDY31773 | Canola | plastid | 76.72 | 76.72 |
| CDX83307 | Canola | peroxisome | 76.34 | 76.34 |
| CDX97897 | Canola | cytosol, extracellular | 67.18 | 76.19 |
| CDY40185 | Canola | plastid | 75.95 | 75.95 |
| CDX83306 | Canola | plastid | 75.95 | 75.95 |
| CDX95751 | Canola | peroxisome | 75.19 | 75.19 |
| CDX95753 | Canola | cytosol, peroxisome, plastid | 74.81 | 74.81 |
| CDY45435 | Canola | cytosol, peroxisome, plastid | 74.43 | 74.43 |
| CDY40182 | Canola | cytosol, peroxisome, plastid | 74.05 | 74.05 |
| CDY31770 | Canola | plastid | 63.74 | 71.98 |
| CDY45433 | Canola | cytosol | 66.41 | 71.02 |
| CDY10276 | Canola | mitochondrion | 69.85 | 68.8 |
| CDY14610 | Canola | mitochondrion | 69.85 | 68.8 |
| CDY06706 | Canola | mitochondrion | 69.85 | 68.8 |
| CDX86486 | Canola | cytosol, peroxisome, plastid | 68.7 | 68.7 |
| CDY68057 | Canola | cytosol | 67.94 | 67.94 |
| CDY16437 | Canola | mitochondrion | 68.7 | 67.67 |
| CDY09917 | Canola | cytosol | 67.56 | 67.56 |
| CDX86485 | Canola | cytosol, peroxisome, plastid | 67.56 | 67.56 |
| CDY52942 | Canola | mitochondrion | 68.32 | 67.29 |
| CDY06260 | Canola | plastid | 66.03 | 66.03 |
| CDX95752 | Canola | cytosol | 59.92 | 65.97 |
| CDY40177 | Canola | cytosol | 69.47 | 65.7 |
| CDY64214 | Canola | mitochondrion | 42.75 | 65.5 |
| CDY16436 | Canola | endoplasmic reticulum, vacuole | 25.95 | 64.76 |
| CDY04977 | Canola | peroxisome | 63.36 | 63.12 |
| VIT_06s0004g05320.t01 | Wine grape | endoplasmic reticulum, peroxisome, plastid | 60.69 | 63.1 |
| CDX98899 | Canola | peroxisome | 62.98 | 62.98 |
| CDY31776 | Canola | cytosol, peroxisome, plastid | 64.89 | 62.73 |
| CDX97893 | Canola | mitochondrion | 64.89 | 62.73 |
| CDY09823 | Canola | peroxisome | 64.89 | 62.73 |
| CDY09824 | Canola | mitochondrion | 64.89 | 62.73 |
| CDY14094 | Canola | peroxisome | 62.6 | 62.36 |
| VIT_06s0004g05440.t01 | Wine grape | cytosol | 19.47 | 62.2 |
| VIT_06s0004g05400.t01 | Wine grape | cytosol | 26.34 | 62.16 |
| VIT_06s0004g05370.t01 | Wine grape | peroxisome | 59.54 | 61.9 |
| KRH24731 | Soybean | nucleus | 62.98 | 61.8 |
| CDY04975 | Canola | mitochondrion | 26.34 | 61.61 |
| CDX70101 | Canola | peroxisome | 61.45 | 61.45 |
| VIT_06s0004g05380.t01 | Wine grape | plastid | 62.98 | 61.11 |
| Solyc03g096650.1.1 | Tomato | cytosol | 20.23 | 59.55 |
| VIT_06s0004g05310.t01 | Wine grape | cytosol | 25.57 | 59.29 |
| VIT_06s0004g05430.t01 | Wine grape | mitochondrion, nucleus, peroxisome | 61.07 | 59.26 |
| KRH24733 | Soybean | nucleus | 59.92 | 59.25 |
| KRH24732 | Soybean | cytosol, endoplasmic reticulum, plastid | 60.69 | 59.11 |
| VIT_06s0004g05330.t01 | Wine grape | peroxisome | 57.25 | 59.06 |
| CDY35991 | Canola | plastid | 27.86 | 58.87 |
| CDX95750 | Canola | cytosol | 61.45 | 58.76 |
| CDY51372 | Canola | plastid | 60.69 | 56.99 |
| CDY72061 | Canola | cytosol | 23.66 | 56.88 |
| VIT_06s0004g05360.t01 | Wine grape | cytosol, mitochondrion, plastid | 50.76 | 55.42 |
| KRH29740 | Soybean | cytosol | 19.85 | 53.06 |
| VIT_06s0004g05390.t01 | Wine grape | cytosol, plasma membrane, plastid | 49.62 | 52.85 |
| VIT_06s0004g05450.t01 | Wine grape | plasma membrane | 35.11 | 51.11 |
| CDX98898 | Canola | cytosol, peroxisome, plasma membrane | 57.63 | 48.71 |
| CDX97890 | Canola | cytosol | 61.45 | 47.49 |
| GSMUA_Achr5P04570_001 | Banana | cytosol | 22.9 | 47.24 |
| CDY65683 | Canola | cytosol, mitochondrion | 69.85 | 45.86 |
| CDY35231 | Canola | peroxisome | 18.7 | 39.52 |
| CDY31767 | Canola | plastid | 74.81 | 34.81 |
| CDY16690 | Canola | peroxisome | 31.68 | 32.55 |
| CDX94534 | Canola | peroxisome | 31.68 | 32.55 |
| CDY27447 | Canola | cytosol, mitochondrion, peroxisome | 30.15 | 30.62 |
| CDX76382 | Canola | cytosol, mitochondrion, peroxisome | 29.77 | 30.35 |
| CDY50145 | Canola | plastid | 77.1 | 27.9 |
| CDY43488 | Canola | cytosol | 28.24 | 25.61 |
| CDY27781 | Canola | cytosol, peroxisome, plastid | 27.48 | 24.91 |
| CDY17559 | Canola | cytoskeleton, nucleus, peroxisome | 27.1 | 24.74 |
| CDY05152 | Canola | cytosol | 21.37 | 23.43 |
| CDY08402 | Canola | cytosol | 24.05 | 21.43 |
| CDX73802 | Canola | peroxisome | 23.66 | 20.81 |
| CDY00799 | Canola | peroxisome | 23.66 | 20.81 |
| CDY05153 | Canola | cytosol, nucleus, plastid | 4.96 | 18.57 |
Protein Annotations
| EnsemblPlants:CDY40183 | EnsemblPlantsGene:GSBRNA2T00069319001 | Gene3D:3.40.50.720 | GO:A0A078HTV6 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam |
| PANTHER:PTHR42898 | PANTHER:PTHR42898:SF7 | PFAM:PF13561 | PRINTS:PR00080 | PRINTS:PR00081 | ProteinID:CDY40183 |
| ProteinID:CDY40183.1 | SEG:seg | SUPFAM:SSF51735 | UniParc:UPI0004EF0B13 | UniProt:A0A078HTV6 | MapMan:50.1.1 |
Description
BnaC04g14110DBnaC04g14110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTV6]
Coordinates
chrLK032465:-:203646..205035
Molecular Weight (calculated)
27980.5 Da
IEP (calculated)
6.650
GRAVY (calculated)
0.111
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKRWSLQGT TALVTGGASG IGHAIVVELA GFGCRVHACD LSETLLNQSL CEWKKKGFQV SGSVCDVSFR SEREKLMQTV STMFNGKLNI LVNNVGSVRV
101: KPTIEYLEDD FSFHISTNLE PAYHLSQLSH PFLKASGSGS IVFISSVAGV VSIDCGSMYG LTKGALNQLA RNLACEWAKD GIRANAVAPN FIYTALAQPF
201: LDDAGFNKSL STRTPLGRPG EPEEVASLVA FLCLPAASYI TGQTICVDGG LTVNGFSYQP QA
101: KPTIEYLEDD FSFHISTNLE PAYHLSQLSH PFLKASGSGS IVFISSVAGV VSIDCGSMYG LTKGALNQLA RNLACEWAKD GIRANAVAPN FIYTALAQPF
201: LDDAGFNKSL STRTPLGRPG EPEEVASLVA FLCLPAASYI TGQTICVDGG LTVNGFSYQP QA
001: MDKRWSLQGL TALVTGGASG IGHAIVEELA GFGAKIHVCD ISKTLLNQSL SEWEKKGFQV SGSVCDASNR LERETLMQTV TTIFDGKLNI LVNNVGTIRT
101: KPTIEYEAED FSFLISTNLE SAYHLSQLSH PLLKASGNGI ITFISSAAGI VSFDAASIYG LTKGALNQLA RNLACEWAKD GIRANAVAPN FITTALAKPF
201: LEDAGFNEIL SSRTPLGRAG EPREVASLVA FLCLPAASYI TGQTICVDGG LTVNGFSYQP
101: KPTIEYEAED FSFLISTNLE SAYHLSQLSH PLLKASGNGI ITFISSAAGI VSFDAASIYG LTKGALNQLA RNLACEWAKD GIRANAVAPN FITTALAKPF
201: LEDAGFNEIL SSRTPLGRAG EPREVASLVA FLCLPAASYI TGQTICVDGG LTVNGFSYQP
Arabidopsis Description
TRITropinone reductase homolog At2g29330 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW16]
SUBAcon: [peroxisome,plastid,cytosol]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.