CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX95752

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07440.1	CDX95752	AT2G29310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015580.1-P	Field mustard	mitochondrion	100.0	100.0
CDY14610	Canola	mitochondrion	96.99	96.99
CDY10276	Canola	mitochondrion	96.99	96.99
AT1G07440.1	Thale cress	mitochondrion	83.83	83.83
CDY16437	Canola	mitochondrion	79.7	79.7
CDY52942	Canola	mitochondrion	77.82	77.82
CDY64214	Canola	mitochondrion	49.62	77.19
CDY16436	Canola	endoplasmic reticulum, vacuole	28.2	71.43
CDY45434	Canola	cytosol, nucleus, plastid	69.55	70.61
CDY45432	Canola	cytosol	69.17	70.23
CDY40188	Canola	cytosol, peroxisome, plasma membrane	69.17	70.23
CDY40183	Canola	plastid	68.8	69.85
CDY45438	Canola	cytosol	68.42	69.47
CDX86485	Canola	cytosol, peroxisome, plastid	68.42	69.47
CDY68057	Canola	cytosol	68.42	69.47
CDY40179	Canola	cytosol, peroxisome, plastid	68.05	69.35
CDX86486	Canola	cytosol, peroxisome, plastid	68.05	69.08
CDY40175	Canola	plasma membrane	68.05	69.08
CDY31772	Canola	cytosol, peroxisome, plastid	67.67	68.7
CDY09917	Canola	cytosol	67.29	68.32
CDY45441	Canola	cytosol	57.52	68.3
CDX97899	Canola	peroxisome	66.92	67.94
CDY31768	Canola	cytosol, peroxisome, plastid	66.92	67.94
CDY06260	Canola	plastid	66.54	67.56
CDY40185	Canola	plastid	66.54	67.56
CDY40182	Canola	cytosol, peroxisome, plastid	66.17	67.18
CDY31773	Canola	plastid	66.17	67.18
CDY45435	Canola	cytosol, peroxisome, plastid	66.17	67.18
CDX83307	Canola	peroxisome	66.17	67.18
CDY40186	Canola	cytosol	52.26	67.15
VIT_06s0004g05440.t01	Wine grape	cytosol	20.68	67.07
CDY62820	Canola	cytosol, endoplasmic reticulum, peroxisome	66.17	66.92
CDY40165	Canola	plastid	65.41	66.41
CDY31774	Canola	cytosol	58.65	66.38
CDY40171	Canola	cytosol	54.89	66.06
CDX83306	Canola	plastid	65.04	66.03
CDX95751	Canola	peroxisome	65.04	66.03
CDX97895	Canola	cytosol	58.27	65.96
CDX97897	Canola	cytosol, extracellular	57.14	65.8
VIT_06s0004g05320.t01	Wine grape	endoplasmic reticulum, peroxisome, plastid	62.03	65.48
CDY09823	Canola	peroxisome	66.54	65.31
CDX95753	Canola	cytosol, peroxisome, plastid	64.29	65.27
CDY09824	Canola	mitochondrion	66.17	64.94
CDX97893	Canola	mitochondrion	66.17	64.94
VIT_06s0004g05400.t01	Wine grape	cytosol	27.07	64.86
VIT_06s0004g05370.t01	Wine grape	peroxisome	60.9	64.29
CDY31776	Canola	cytosol, peroxisome, plastid	65.41	64.21
CDY14094	Canola	peroxisome	63.16	63.88
CDY04977	Canola	peroxisome	63.16	63.88
VIT_06s0004g05310.t01	Wine grape	cytosol	27.07	63.72
CDY45433	Canola	cytosol	58.65	63.67
CDX98899	Canola	peroxisome	62.41	63.36
VIT_06s0004g05380.t01	Wine grape	plastid	64.29	63.33
Solyc03g096650.1.1	Tomato	cytosol	21.05	62.92
CDX70101	Canola	peroxisome	61.28	62.21
CDX95750	Canola	cytosol	63.91	62.04
CDY31770	Canola	plastid	53.38	61.21
VIT_06s0004g05430.t01	Wine grape	mitochondrion, nucleus, peroxisome	62.03	61.11
CDY51372	Canola	plastid	63.91	60.93
CDY04975	Canola	mitochondrion	25.56	60.71
KRH24731	Soybean	nucleus	60.9	60.67
VIT_06s0004g05330.t01	Wine grape	peroxisome	57.89	60.63
CDY72061	Canola	cytosol	24.81	60.55
CDY35991	Canola	plastid	27.82	59.68
KRH24733	Soybean	nucleus	58.65	58.87
VIT_06s0004g05360.t01	Wine grape	cytosol, mitochondrion, plastid	53.01	58.75
CDX95752	Canola	cytosol	51.88	57.98
CDY40177	Canola	cytosol	59.4	57.04
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	57.52	56.88
VIT_06s0004g05450.t01	Wine grape	plasma membrane	36.47	53.89
CDY65683	Canola	cytosol, mitochondrion	79.32	52.88
GSMUA_Achr5P04570_001	Banana	cytosol	25.19	52.76
VIT_06s0004g05390.t01	Wine grape	cytosol, plasma membrane, plastid	48.5	52.44
KRH29740	Soybean	cytosol	19.17	52.04
CDX98898	Canola	cytosol, peroxisome, plasma membrane	58.27	50.0
CDX97890	Canola	cytosol	63.53	49.85
CDY35231	Canola	peroxisome	15.79	33.87
CDY31767	Canola	plastid	69.17	32.68
CDX94534	Canola	peroxisome	30.45	31.76
CDY16690	Canola	peroxisome	30.45	31.76
CDY27447	Canola	cytosol, mitochondrion, peroxisome	29.32	30.23
CDX76382	Canola	cytosol, mitochondrion, peroxisome	28.95	29.96
CDY43488	Canola	cytosol	30.83	28.37
CDY17559	Canola	cytoskeleton, nucleus, peroxisome	30.08	27.87
CDY27781	Canola	cytosol, peroxisome, plastid	29.7	27.34
CDY50145	Canola	plastid	68.05	25.0
CDY00799	Canola	peroxisome	27.07	24.16
CDX73802	Canola	peroxisome	27.07	24.16
CDY08402	Canola	cytosol	26.69	24.15
CDY05152	Canola	cytosol	21.43	23.85
CDY05153	Canola	cytosol, nucleus, plastid	5.64	21.43

Protein Annotations

EnsemblPlants:CDY06706	EnsemblPlantsGene:GSBRNA2T00122886001	Gene3D:3.40.50.720	GO:A0A078EZX0	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	InterPro:Sc_DH/Rdtase_CS
PANTHER:PTHR42898	PANTHER:PTHR42898:SF7	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ProteinID:CDY06706
ProteinID:CDY06706.1	ScanProsite:PS00061	SUPFAM:SSF51735	UniParc:UPI0002544BD2	MapMan:50.1.1	:

Description

BnaA10g04850D

Coordinates

chrLK031972:-:390489..391978

Molecular Weight (calculated)

28352.9 Da

IEP (calculated)

7.222

GRAVY (calculated)

0.055

Length

266 amino acids

Sequence
(BLAST)

001: MAGAEQLQRW SLRAKTALVT GGTKGIGHAV VEELARFGAI IHTCGRDESQ LNECISHWQK KGFHVTGSVC DVTSRTDREK LMETVSSMFG GKLDILINNV
101: GAIRSKPTVE HTADDFSFHI STNLESAFHL SQLSHPLLKA SGCGSIVFMS SVAGVVSLSI SSIYCATKGA MNQLARNLAC EWASDGIRAN AVAPAVIATP
201: LAKAVYDDDF KKAVTSRKPL GRFGEPEEVA SLVAFLCMPA ASYITGQTIC VDGGLSVNGF SYQPHD

Best Arabidopsis Sequence Match ( AT1G07440.1 )
(BLAST)

001: MAGAEQSQRW SLKAKTVLVT GGTKGIGHAI VEEFAGFGAV IHTCARNEYE LNECLSKWQK KGFQVTGSVC DASLRPEREK LMQTVSSMFG GKLDILINNL
101: GAIRSKPTLD YTAEDFSFHI STNLESAYHL SQLAHPLLKA SGCGNIIFMS SIAGVVSASV GSIYSATKGA LNQLARNLAC EWASDGIRAN AVAPAVIATP
201: LAEAVYDDEF KKVVISRKPL GRFGEPEEVS SLVAFLCMPA ASYITGQTIC VDGGLTVNGF SYQPQG

Arabidopsis Description

Tropinone reductase homolog At1g07440 [Source:UniProtKB/Swiss-Prot;Acc:P0DKI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.