CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
mitochondrion 2
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97856
KRG97857
KRG97870
KRH22291
KRH24731
KRH24732
KRH24733
KRH27037
KRH29740
KRH31007
KRH31021
KRH31025
KRH31026

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07440.1	KRH24731	AT2G29310.1	21798944
AT1G07440.1	KRH24732	AT2G29310.1	21798944
AT1G07440.1	KRH24733	AT2G29310.1	21798944
AT1G07440.1	KRH29740	AT2G29310.1	21798944
AT1G07450.1	KRH24731	AT2G29320.1	21798944
AT1G07450.1	KRH24732	AT2G29320.1	21798944
AT1G07450.1	KRH24733	AT2G29320.1	21798944
AT1G07450.1	KRH29740	AT2G29320.1	21798944
AT1G07450.1	KRH24731	AT2G29350.1	21798944
AT1G07450.1	KRH24732	AT2G29350.1	21798944
AT1G07450.1	KRH24733	AT2G29350.1	21798944
AT1G07450.1	KRH29740	AT2G29350.1	21798944
AT2G29310.1	KRH24731	AT1G07450.1	21798944
AT2G29310.1	KRH24732	AT1G07450.1	21798944
AT2G29310.1	KRH24733	AT1G07450.1	21798944
AT2G29310.1	KRH29740	AT1G07450.1	21798944
AT2G29310.1	KRH24731	AT2G29310.1	21798944
AT2G29310.1	KRH24732	AT2G29310.1	21798944
AT2G29310.1	KRH24733	AT2G29310.1	21798944
AT2G29310.1	KRH29740	AT2G29310.1	21798944
AT2G29320.1	KRH24731	AT2G29310.1	21798944
AT2G29320.1	KRH24732	AT2G29310.1	21798944
AT2G29320.1	KRH24733	AT2G29310.1	21798944
AT2G29320.1	KRH29740	AT2G29310.1	21798944
AT2G29330.1	KRH24731	AT2G29320.1	21798944
AT2G29330.1	KRH24732	AT2G29320.1	21798944
AT2G29330.1	KRH24733	AT2G29320.1	21798944
AT2G29330.1	KRH29740	AT2G29320.1	21798944
AT2G29340.1	KRH22291	AT2G42580.1	19000166
AT2G29340.1	KRH27037	AT2G42580.1	19000166
AT2G29350.1	KRH24731	AT2G29310.1	21798944
AT2G29350.1	KRH24732	AT2G29310.1	21798944
AT2G29350.1	KRH24733	AT2G29310.1	21798944
AT2G29350.1	KRH29740	AT2G29310.1	21798944
AT2G29350.1	KRH24731	AT2G29320.1	21798944
AT2G29350.1	KRH24732	AT2G29320.1	21798944
AT2G29350.1	KRH24733	AT2G29320.1	21798944
AT2G29350.1	KRH29740	AT2G29320.1	21798944
AT2G29350.1	KRH24731	AT2G29350.1	21798944
AT2G29350.1	KRH24732	AT2G29350.1	21798944
AT2G29350.1	KRH24733	AT2G29350.1	21798944
AT2G29350.1	KRH29740	AT2G29350.1	21798944
AT2G29350.1	KRH24731	AT2G29360.1	21798944
AT2G29350.1	KRH24732	AT2G29360.1	21798944
AT2G29350.1	KRH24733	AT2G29360.1	21798944
AT2G29350.1	KRH29740	AT2G29360.1	21798944
AT2G29350.1	KRG97856	AT5G06060.1	21798944
AT2G29350.1	KRG97857	AT5G06060.1	21798944
AT2G29350.1	KRG97870	AT5G06060.1	21798944
AT2G29350.1	KRH31007	AT5G06060.1	21798944
AT2G29350.1	KRH31021	AT5G06060.1	21798944
AT2G29350.1	KRH31025	AT5G06060.1	21798944
AT2G29350.1	KRH31026	AT5G06060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	88.02	87.36
KRH29740	Soybean	cytosol	31.84	86.73
KRH24733	Soybean	nucleus	81.27	81.89
Solyc03g096650.1.1	Tomato	cytosol	21.72	65.17
AT1G07440.1	Thale cress	mitochondrion	64.79	65.04
AT2G29350.1	Thale cress	plastid	65.17	64.68
VIT_06s0004g05320.t01	Wine grape	endoplasmic reticulum, peroxisome, plastid	61.05	64.68
Bra030683.1-P	Field mustard	cytosol, mitochondrion, plastid	62.92	64.12
AT2G30670.1	Thale cress	cytosol, nucleus, peroxisome	62.55	63.74
Bra018400.1-P	Field mustard	cytosol, nucleus, plastid	62.55	63.74
CDY68057	Canola	cytosol	62.55	63.74
VIT_06s0004g05380.t01	Wine grape	plastid	64.42	63.7
AT2G29150.1	Thale cress	peroxisome	63.67	63.43
VIT_06s0004g05440.t01	Wine grape	cytosol	19.48	63.41
CDX86486	Canola	cytosol, peroxisome, plastid	62.17	63.36
CDY45434	Canola	cytosol, nucleus, plastid	62.17	63.36
Bra039755.1-P	Field mustard	mitochondrion	62.92	63.16
CDY16437	Canola	mitochondrion	62.92	63.16
CDY64214	Canola	mitochondrion	40.45	63.16
AT2G29360.1	Thale cress	cytosol	64.04	63.1
AT2G29290.2	Thale cress	plastid	61.8	62.98
CDX86485	Canola	cytosol, peroxisome, plastid	61.8	62.98
CDY40183	Canola	plastid	61.8	62.98
CDY52942	Canola	mitochondrion	62.55	62.78
AT2G29330.1	Thale cress	cytosol, peroxisome, plastid	61.05	62.69
Bra018399.1-P	Field mustard	cytosol, peroxisome, plastid	61.42	62.6
Bra031575.1-P	Field mustard	plastid	61.42	62.6
Bra039971.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	61.42	62.6
CDY06260	Canola	plastid	61.42	62.6
CDY09917	Canola	cytosol	61.42	62.6
CDY40182	Canola	cytosol, peroxisome, plastid	61.42	62.6
CDY45435	Canola	cytosol, peroxisome, plastid	61.42	62.6
Bra027962.1-P	Field mustard	cytosol	40.45	62.43
Bra039976.1-P	Field mustard	cytosol	63.3	62.36
CDY09823	Canola	peroxisome	63.3	62.36
CDY31776	Canola	cytosol, peroxisome, plastid	63.3	62.36
AT2G29370.1	Thale cress	peroxisome	62.55	62.31
CDY31772	Canola	cytosol, peroxisome, plastid	61.05	62.21
VIT_06s0004g05400.t01	Wine grape	cytosol	25.84	62.16
CDX97893	Canola	mitochondrion	62.92	61.99
CDY09824	Canola	mitochondrion	62.92	61.99
AT1G07450.1	Thale cress	cytosol, nucleus, peroxisome	60.3	61.92
CDY40186	Canola	cytosol	47.94	61.84
Bra018391.1-P	Field mustard	cytosol	60.67	61.83
AT2G29170.1	Thale cress	cytosol	24.72	61.68
VIT_06s0004g05430.t01	Wine grape	mitochondrion, nucleus, peroxisome	62.17	61.48
Bra018393.1-P	Field mustard	cytosol	60.3	61.45
CDY40175	Canola	plasma membrane	60.3	61.45
Bra000477.1-P	Field mustard	plastid	59.93	61.07
Bra018396.1-P	Field mustard	cytosol	59.93	61.07
Bra039973.1-P	Field mustard	plastid	59.93	61.07
CDX83306	Canola	plastid	59.93	61.07
CDX97899	Canola	peroxisome	59.93	61.07
CDY40188	Canola	cytosol, peroxisome, plasma membrane	59.93	61.07
CDY45438	Canola	cytosol	59.93	61.07
Bra015580.1-P	Field mustard	mitochondrion	60.67	60.9
CDY06706	Canola	mitochondrion	60.67	60.9
Bra039967.1-P	Field mustard	plastid	59.55	60.69
CDX95753	Canola	cytosol, peroxisome, plastid	59.55	60.69
CDY31768	Canola	cytosol, peroxisome, plastid	59.55	60.69
CDY45432	Canola	cytosol	59.55	60.69
VIT_06s0004g05330.t01	Wine grape	peroxisome	57.68	60.63
CDY40179	Canola	cytosol, peroxisome, plastid	59.18	60.54
CDY10276	Canola	mitochondrion	60.3	60.53
CDY14610	Canola	mitochondrion	60.3	60.53
Bra039974.1-P	Field mustard	cytosol, plasma membrane, plastid	59.55	60.46
Bra018405.1-P	Field mustard	cytosol	59.18	60.31
Bra039513.1-P	Field mustard	peroxisome	59.18	60.31
Bra039514.1-P	Field mustard	cytosol, peroxisome, plastid	59.18	60.31
CDX83307	Canola	peroxisome	59.18	60.31
CDY31773	Canola	plastid	59.18	60.31
CDY40165	Canola	plastid	59.18	60.31
VIT_06s0004g05310.t01	Wine grape	cytosol	25.47	60.18
CDY62820	Canola	cytosol, endoplasmic reticulum, peroxisome	59.18	60.08
CDX97895	Canola	cytosol	52.81	60.0
CDY31774	Canola	cytosol	52.81	60.0
KRH31026	Soybean	cytosol, mitochondrion, peroxisome, plastid	61.05	59.93
AT2G29310.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	58.8	59.92
Bra000476.1-P	Field mustard	cytosol, peroxisome, plastid	58.8	59.92
CDX95751	Canola	peroxisome	58.8	59.92
CDY40185	Canola	plastid	58.8	59.92
VIT_06s0004g05370.t01	Wine grape	peroxisome	56.55	59.92
Bra018402.1-P	Field mustard	cytosol	49.06	59.82
Bra039969.1-P	Field mustard	cytosol	58.8	59.7
Bra018404.1-P	Field mustard	cytosol	41.57	59.68
CDY72061	Canola	cytosol	24.34	59.63
AT2G29320.1	Thale cress	mitochondrion	59.93	59.48
Bra018401.1-P	Field mustard	cytosol	56.18	59.29
CDX95750	Canola	cytosol	60.67	59.12
CDY45441	Canola	cytosol	49.44	58.93
KRH00026	Soybean	cytosol, mitochondrion, peroxisome	58.05	58.71
KRG97856	Soybean	mitochondrion, plastid	59.55	58.46
CDY51372	Canola	plastid	61.05	58.42
CDY40171	Canola	cytosol	48.31	58.37
CDX97897	Canola	cytosol, extracellular	50.19	58.01
KRH31007	Soybean	mitochondrion	58.8	57.93
KRH31025	Soybean	plastid	59.93	57.76
CDY16436	Canola	endoplasmic reticulum, vacuole	22.47	57.14
KRH00030	Soybean	cytosol	56.93	57.14
Bra039977.1-P	Field mustard	plastid	41.2	56.99
KRH49151	Soybean	mitochondrion	56.55	56.98
KRH49153	Soybean	cytosol	56.55	56.77
KRH00029	Soybean	peroxisome	20.6	56.12
CDY45433	Canola	cytosol	51.31	55.92
KRH24734	Soybean	extracellular, plasma membrane, vacuole	23.6	55.26
KRG97870	Soybean	mitochondrion	51.69	55.2
CDY31770	Canola	plastid	47.94	55.17
CDX95752	Canola	cytosol	49.06	55.04
Bra039966.1-P	Field mustard	cytosol	59.18	54.86
AT2G29340.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	62.92	54.72
VIT_06s0004g05360.t01	Wine grape	cytosol, mitochondrion, plastid	49.06	54.58
KRH49156	Soybean	plastid	34.83	54.39
AT2G29300.2	Thale cress	extracellular	58.05	54.2
GSMUA_Achr5P04570_001	Banana	cytosol	25.47	53.54
KRG97857	Soybean	mitochondrion	49.06	52.4
VIT_06s0004g05450.t01	Wine grape	plasma membrane	35.21	52.22
KRH31021	Soybean	mitochondrion	58.43	51.49
VIT_06s0004g05390.t01	Wine grape	cytosol, plasma membrane, plastid	46.82	50.81
KRH29741	Soybean	plastid	58.05	50.49
CDY40177	Canola	cytosol	52.06	50.18
KRH49152	Soybean	cytosol	53.56	48.47
Bra027961.1-P	Field mustard	cytosol	53.93	47.52
CDX97890	Canola	cytosol	59.93	47.2
KRH00032	Soybean	cytosol, peroxisome, plastid	29.59	43.89
CDY65683	Canola	cytosol, mitochondrion	61.42	41.1
KRH02005	Soybean	endoplasmic reticulum, nucleus	32.58	34.52
KRH36525	Soybean	endoplasmic reticulum	29.59	30.98
KRH11511	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	29.21	30.59
CDY31767	Canola	plastid	64.42	30.55
KRG92837	Soybean	endoplasmic reticulum, nucleus	30.34	27.65
KRH33956	Soybean	endoplasmic reticulum	29.96	27.3
KRG96884	Soybean	cytosol	27.72	25.08
KRH70902	Soybean	cytosol	10.11	24.55
KRH68615	Soybean	cytosol, nucleus, plastid	20.22	24.43
KRH68572	Soybean	cytosol	27.34	24.33
KRH51046	Soybean	cytosol, peroxisome, plastid	28.46	23.82
KRH68573	Soybean	cytosol	23.97	23.27
KRH13054	Soybean	nucleus	25.47	22.82
KRH44885	Soybean	nucleus	25.47	22.82
CDY50145	Canola	plastid	59.93	22.1

Protein Annotations

EntrezGene:100780806	Gene3D:3.40.50.720	MapMan:50.1.1	UniProt:A0A0R4J4R5	EMBL:ACUP02007184	EnsemblPlantsGene:GLYMA_12G059100
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	EnsemblPlants:KRH24731	ProteinID:KRH24731	ProteinID:KRH24731.1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR42898
PANTHER:PTHR42898:SF7	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI000176231A	:

Description

hypothetical protein

Coordinates

chr12:-:4278315..4280533

Molecular Weight (calculated)

28432.9 Da

IEP (calculated)

6.021

GRAVY (calculated)

0.007

Length

267 amino acids

Sequence
(BLAST)

001: MAEASIGSKS SRWSLQGMTA LVTGGSKGIG YAIVEELAQL GATVHTCARN EAELNESLNE WNTKGYRVTG SVCDVASRAE RQDLIARVSN EFNGKLNILV
101: NNVGTNVPKH TLDVTEEDFS FLINTNLESA YHLSQLAHPL LKASEAANII FISSIAGVLS IGIGSTYGAT KGAMNQLTKN LACEWAKDNI RTNCVAPGPI
201: KTPLGDKHFK NEKLLNAFIS QTPLGRIGEA EEVSSLVAFL CLPAASYITG QTICVDGGLT VNGLYIN

Best Arabidopsis Sequence Match ( AT1G07440.1 )
(BLAST)

001: MAGAEQSQRW SLKAKTVLVT GGTKGIGHAI VEEFAGFGAV IHTCARNEYE LNECLSKWQK KGFQVTGSVC DASLRPEREK LMQTVSSMFG GKLDILINNL
101: GAIRSKPTLD YTAEDFSFHI STNLESAYHL SQLAHPLLKA SGCGNIIFMS SIAGVVSASV GSIYSATKGA LNQLARNLAC EWASDGIRAN AVAPAVIATP
201: LAEAVYDDEF KKVVISRKPL GRFGEPEEVS SLVAFLCMPA ASYITGQTIC VDGGLTVNGF SYQPQG

Arabidopsis Description

Tropinone reductase homolog At1g07440 [Source:UniProtKB/Swiss-Prot;Acc:P0DKI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.